Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   FEF05_RS04095 Genome accession   NZ_CP040243
Coordinates   797468..798097 (-) Length   209 a.a.
NCBI ID   WP_012621497.1    Uniprot ID   B8F317
Organism   Glaesserella parasuis strain HPS-1     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 792468..803097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEF05_RS04080 (FEF05_04085) ligA 793163..795190 (+) 2028 WP_149350776.1 NAD-dependent DNA ligase LigA -
  FEF05_RS04085 (FEF05_04090) recQ 795248..797077 (-) 1830 WP_149350777.1 ATP-dependent DNA helicase RecQ Machinery gene
  FEF05_RS04090 (FEF05_04095) cyaY 797077..797385 (-) 309 WP_012621496.1 iron donor protein CyaY -
  FEF05_RS04095 (FEF05_04100) dinR/lexA 797468..798097 (-) 630 WP_012621497.1 transcriptional repressor LexA Regulator
  FEF05_RS04100 (FEF05_04105) - 798219..799316 (-) 1098 WP_012621948.1 ISAs1 family transposase -
  FEF05_RS04105 (FEF05_04110) - 799506..800285 (-) 780 WP_149350778.1 hypothetical protein -
  FEF05_RS04110 (FEF05_04115) - 800215..800505 (-) 291 WP_149350779.1 hypothetical protein -
  FEF05_RS04115 (FEF05_04120) - 800509..801093 (-) 585 WP_012621499.1 hypothetical protein -
  FEF05_RS04120 (FEF05_04125) - 801095..802066 (-) 972 WP_149350780.1 SEL1-like repeat protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23212.60 Da        Isoelectric Point: 5.6315

>NTDB_id=320688 FEF05_RS04095 WP_012621497.1 797468..798097(-) (dinR/lexA) [Glaesserella parasuis strain HPS-1]
MKRQHLTARQQEIFEFVKNHIESTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVEDEAANDE
EGLPLIGKVAAGTPIEAIEHIEKHYPVNGAMFSPAADYLLKVNGNSMEKIGILDGDLLAVHKTKSVRNGQVVVARVDDEV
TVKRLEKKGDLIYLHPENDELEPIVVDPRQSYIEIEGIAVGVIRSNAWM

Nucleotide


Download         Length: 630 bp        

>NTDB_id=320688 FEF05_RS04095 WP_012621497.1 797468..798097(-) (dinR/lexA) [Glaesserella parasuis strain HPS-1]
ATGAAACGTCAGCACCTAACGGCTCGTCAGCAAGAAATCTTTGAATTTGTAAAAAATCATATTGAAAGTACGGGTATGCC
ACCAACTCGTGTAGAAATTGCTCGTGAAATTGGGTTTAAATCACCAAATGCCGCAGAAGAACACCTTAAAGCCCTTGCTC
GTAAAGGCTATATTGAAATGCTTTCAGGGACTTCGCGTGGGATCCGTATTTTAGTGGAAGATGAAGCAGCAAACGATGAA
GAAGGTTTGCCTTTAATTGGTAAAGTTGCAGCAGGTACGCCGATTGAAGCCATTGAACATATCGAAAAACATTATCCTGT
GAATGGGGCAATGTTCTCGCCAGCTGCCGATTATCTTCTTAAGGTGAATGGGAACTCAATGGAAAAAATTGGCATATTAG
ACGGTGATTTACTTGCAGTGCATAAAACTAAATCTGTTCGTAATGGGCAAGTCGTTGTCGCCCGTGTTGATGATGAAGTC
ACCGTCAAACGCTTAGAGAAAAAAGGCGATTTAATCTATTTACACCCAGAAAATGATGAATTAGAGCCGATTGTCGTCGA
TCCTCGTCAATCTTATATTGAAATCGAAGGCATTGCCGTAGGCGTTATTCGTAGTAATGCGTGGATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-67)

Peptidase S24-like (Peptidase_S24)

(84-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F317

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.235

97.608

0.373