Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   FEF05_RS01220 Genome accession   NZ_CP040243
Coordinates   230144..231520 (+) Length   458 a.a.
NCBI ID   WP_149350585.1    Uniprot ID   -
Organism   Glaesserella parasuis strain HPS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 225144..236520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEF05_RS01200 (FEF05_01205) pilC 225791..226987 (-) 1197 WP_149350581.1 type II secretion system F family protein Machinery gene
  FEF05_RS01205 (FEF05_01210) pilB 226980..228365 (-) 1386 WP_149350582.1 GspE/PulE family protein Machinery gene
  FEF05_RS01210 (FEF05_01215) - 228698..229063 (-) 366 WP_149350583.1 endonuclease domain-containing protein -
  FEF05_RS01215 (FEF05_01220) pilA 229504..229956 (-) 453 WP_149350584.1 pilin Machinery gene
  FEF05_RS01220 (FEF05_01225) radA/sms 230144..231520 (+) 1377 WP_149350585.1 DNA repair protein RadA Machinery gene
  FEF05_RS01225 (FEF05_01230) gmk 231573..232199 (-) 627 WP_149350586.1 guanylate kinase -
  FEF05_RS01230 (FEF05_01235) - 232268..233240 (-) 973 Protein_246 IS110 family transposase -
  FEF05_RS01235 (FEF05_01240) gpt 233641..234120 (-) 480 WP_005714020.1 xanthine phosphoribosyltransferase -
  FEF05_RS01240 (FEF05_01245) - 234300..235754 (+) 1455 WP_149350587.1 aminoacyl-histidine dipeptidase -
  FEF05_RS01245 (FEF05_01250) - 235798..236472 (-) 675 WP_005714023.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49516.17 Da        Isoelectric Point: 7.9469

>NTDB_id=320674 FEF05_RS01220 WP_149350585.1 230144..231520(+) (radA/sms) [Glaesserella parasuis strain HPS-1]
MAKAPKTAYVCNDCGAEYARWMGQCKACLAWNTISEVRLISAKESKSDRLSGYAGETTGKIQRLSDIDLQEVPRFSSGFY
ELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLSQSVPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEHI
CNLADQEKPKLMVIDSIQVMHLADIQSSPGSVAQVRECAAFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASLL
LEGEADSRYRTLRSQKNRFGAVNELGVFAMTEQGLKEVKNPSAIFLSRSEEQTSGSSVMVLWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEQNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLALISSFRNRPLPQDLVVFGEVGL
AGEIRPVPSGQERISEAAKHGFKRAIIPHGNAPKKAIKGMEVFTVKKLSNALDIVNDL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=320674 FEF05_RS01220 WP_149350585.1 230144..231520(+) (radA/sms) [Glaesserella parasuis strain HPS-1]
ATGGCAAAAGCACCAAAAACTGCGTATGTATGTAATGATTGTGGCGCGGAATATGCTCGTTGGATGGGACAGTGTAAGGC
GTGTTTAGCGTGGAACACCATTAGCGAAGTCCGTCTGATTTCGGCAAAAGAGAGCAAAAGTGATCGCTTGAGTGGCTATG
CAGGGGAAACGACAGGCAAAATTCAGCGATTGTCTGACATTGATTTGCAGGAAGTGCCACGTTTTAGCAGTGGTTTTTAT
GAGCTAGATCGTGTGCTGGGGGGCGGTATTGTACCTGGTAGTGCGATTTTGATCGGCGGACACCCTGGCGCAGGGAAAAG
TACCTTGCTCTTGCAGGTAATGTGCGGTTTATCGCAAAGTGTGCCGACCCTTTATGTGACGGGGGAAGAGTCGCTACAAC
AGGTGGCAATGCGTGCTAACCGCTTGGGCTTGCCGACGGATAATCTAAAAATGTTATCTGAAACCTCAGTCGAACATATT
TGTAACCTTGCCGATCAGGAAAAACCAAAGCTGATGGTGATTGACTCTATTCAAGTAATGCACCTTGCGGATATTCAATC
TTCCCCTGGCAGTGTGGCTCAAGTGCGTGAATGTGCGGCATTTTTGACACGTTATGCCAAAACACGTCAAGTGGCGATTA
TTATGGTCGGCCACGTTACGAAAGATGGAACTTTAGCAGGCCCTAAAGTGCTAGAACACGCCATTGACGCTTCGCTGTTA
TTGGAAGGAGAGGCGGACTCGCGTTATCGTACCTTACGCAGTCAGAAAAACCGTTTCGGAGCAGTGAACGAACTCGGCGT
ATTTGCAATGACAGAACAAGGCTTAAAAGAAGTGAAGAACCCTTCGGCGATCTTCTTAAGCCGTAGCGAAGAACAGACTT
CAGGCAGTTCGGTGATGGTATTATGGGAAGGCACTCGTCCGTTGTTGGTAGAAATTCAAGCATTGGTCGATCACTCAATG
CTTGCCAACCCTCGCCGTGTTGCGGTGGGGCTAGAACAGAACCGCTTATCACTGTTGCTTGCGGTGTTACATCGACACGG
TGGCTTGCAAATGTCCGACCAAGATGTGTTTGTGAATGTGGTCGGCGGTGTAAAAGTCACTGAAACCAGTGCCGACTTAG
CTCTATTGCTGGCACTCATTTCTAGCTTCCGCAATCGTCCGTTACCGCAAGATTTGGTGGTCTTTGGCGAAGTTGGTTTA
GCAGGGGAAATTCGCCCTGTGCCAAGCGGACAAGAGCGAATTAGTGAAGCGGCAAAACACGGCTTTAAGCGTGCGATCAT
TCCTCACGGCAACGCCCCGAAAAAAGCGATTAAGGGAATGGAAGTCTTTACCGTGAAGAAATTAAGTAATGCGTTGGATA
TTGTGAATGATCTATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)

AAA domain (AAA_25)

(84-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.692

99.345

0.474
  radA Streptococcus mitis NCTC 12261

44.592

98.908

0.441
  radA Streptococcus mitis SK321

44.371

98.908

0.439
  radA Streptococcus pneumoniae Rx1

45.688

93.668

0.428
  radA Streptococcus pneumoniae D39

45.688

93.668

0.428
  radA Streptococcus pneumoniae R6

45.688

93.668

0.428
  radA Streptococcus pneumoniae TIGR4

45.688

93.668

0.428