Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D9829_RS07160 Genome accession   NZ_CP033044
Coordinates   1447774..1449153 (-) Length   459 a.a.
NCBI ID   WP_121610335.1    Uniprot ID   A0A4R2AZ58
Organism   Mesobacillus foraminis strain Bac44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1442774..1454153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9829_RS07140 ispF 1444170..1444646 (-) 477 WP_121610331.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  D9829_RS07145 ispD 1444688..1445389 (-) 702 WP_121610332.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  D9829_RS07150 - 1445409..1446494 (-) 1086 WP_121610333.1 PIN/TRAM domain-containing protein -
  D9829_RS07155 disA 1446695..1447768 (-) 1074 WP_121610334.1 DNA integrity scanning diadenylate cyclase DisA -
  D9829_RS07160 radA 1447774..1449153 (-) 1380 WP_121610335.1 DNA repair protein RadA Machinery gene
  D9829_RS07165 clpC 1449418..1451856 (-) 2439 WP_121610336.1 ATP-dependent protease ATP-binding subunit ClpC -
  D9829_RS07170 - 1451874..1452944 (-) 1071 WP_121610337.1 protein arginine kinase -
  D9829_RS07175 - 1452948..1453496 (-) 549 WP_121610338.1 UvrB/UvrC motif-containing protein -
  D9829_RS07180 - 1453522..1453983 (-) 462 WP_121610339.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49790.18 Da        Isoelectric Point: 7.9699

>NTDB_id=320665 D9829_RS07160 WP_121610335.1 1447774..1449153(-) (radA) [Mesobacillus foraminis strain Bac44]
MAKRKTKFMCQECGYESPKWMGKCPGCGQWNKMVEETESTGTGRRGAFTNTSSPGLAAKATPITSIETVSEPRIKTELKE
LNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSYQLAKIGQSVLYISGEESMRQTKLRAERLSVSSENLLVYSETNLEQI
SSTIEKSNPDFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVLY
FEGERHHTYRILRAVKNRFGSTNEMGIFEMKESGLEEVANPSEIFLEERSQGASGSTVVASMEGTRPVLVEVQALISPTS
FGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDKPTRPSDCIIGEVGL
TGEVRRVSRIEQRVQEAAKLGFERIILPENNLGGWTGPRGIQLIGVSSVSQALKVTLEG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=320665 D9829_RS07160 WP_121610335.1 1447774..1449153(-) (radA) [Mesobacillus foraminis strain Bac44]
ATGGCAAAACGAAAAACGAAATTCATGTGCCAGGAATGCGGATATGAATCTCCCAAATGGATGGGCAAATGCCCTGGGTG
TGGCCAATGGAACAAGATGGTGGAAGAAACGGAGAGTACCGGGACAGGCCGCAGGGGAGCTTTTACCAACACTAGCAGCC
CTGGGCTGGCAGCTAAGGCAACTCCGATAACATCAATTGAAACGGTTAGTGAGCCTAGGATAAAAACTGAGCTGAAAGAA
TTGAACCGGGTGCTTGGCGGGGGAGTCGTGAAGGGATCGCTTGTTCTTATCGGCGGAGACCCGGGGATTGGGAAATCCAC
ACTTTTGCTCCAGGTATCGTATCAGCTTGCAAAGATAGGGCAGTCCGTCCTTTATATTTCGGGCGAAGAATCTATGAGGC
AGACTAAGCTCAGAGCGGAAAGGCTGTCCGTTTCATCGGAGAATCTGCTCGTATATTCGGAAACCAATCTGGAACAAATT
AGCTCAACCATTGAGAAGTCCAATCCGGACTTTGTAATCGTGGATTCCATTCAGACTGTCTTCCATCCGGAGGTGACCTC
TGCACCCGGAAGTGTTTCACAGGTTAGGGAATGCACAGCTGAACTCATGAGGATTGCTAAAACAAAAGGAATAGCTATTT
TTATTGTTGGCCATGTCACAAAGGAAGGGTCCATTGCAGGTCCTCGCCTCCTTGAGCACATGGTGGACACTGTCCTTTAT
TTCGAGGGAGAGCGGCATCACACGTACAGGATTTTGAGGGCGGTTAAAAATCGGTTTGGTTCAACCAATGAAATGGGTAT
TTTTGAAATGAAGGAGAGCGGATTGGAAGAGGTGGCCAATCCTTCTGAAATATTTCTGGAGGAACGATCACAGGGTGCTT
CGGGGTCCACCGTGGTCGCATCCATGGAAGGCACAAGGCCTGTCCTTGTAGAAGTCCAGGCCCTCATTTCGCCAACGAGC
TTTGGGAACCCGAGAAGGATGGCGACTGGGATTGACCATAATAGAGTAAGCCTGCTTATGGCTGTGCTAGAAAAAAGAGT
TGGACTGCTGCTTCAGAATCAGGATGCCTATCTGAAAGTTGCAGGAGGGGTTAAGCTGGATGAGCCGGCCATTGACCTGG
CCATTGCGGTTAGCATTGCTTCAAGCTTTCGTGATAAGCCAACAAGACCCTCGGATTGTATTATCGGCGAGGTTGGCCTT
ACAGGCGAAGTAAGGCGAGTATCGAGAATCGAGCAAAGGGTACAGGAAGCCGCTAAACTTGGGTTTGAGCGAATCATCTT
GCCTGAAAATAACCTTGGCGGGTGGACGGGTCCCAGAGGCATTCAGCTTATAGGTGTGTCATCGGTCAGCCAGGCATTAA
AAGTAACGTTGGAGGGATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(366-431)

AAA domain (AAA_25)

(65-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R2AZ58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.174

100

0.773
  radA Streptococcus mitis NCTC 12261

64.097

98.911

0.634
  radA Streptococcus pneumoniae Rx1

64.097

98.911

0.634
  radA Streptococcus pneumoniae D39

64.097

98.911

0.634
  radA Streptococcus pneumoniae R6

64.097

98.911

0.634
  radA Streptococcus pneumoniae TIGR4

64.097

98.911

0.634
  radA Streptococcus mitis SK321

64.097

98.911

0.634

Multiple sequence alignment