Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   D9829_RS02620 Genome accession   NZ_CP033044
Coordinates   526349..528166 (-) Length   605 a.a.
NCBI ID   WP_121609574.1    Uniprot ID   -
Organism   Mesobacillus foraminis strain Bac44     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 521349..533166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9829_RS02590 - 521903..522538 (-) 636 WP_121609569.1 GTP pyrophosphokinase family protein -
  D9829_RS02595 - 522584..522949 (-) 366 WP_121609570.1 hypothetical protein -
  D9829_RS02600 - 523071..523655 (+) 585 WP_121609571.1 CYTH domain-containing protein -
  D9829_RS02605 - 523700..524317 (+) 618 WP_121609572.1 lytic transglycosylase domain-containing protein -
  D9829_RS02610 - 524550..524945 (+) 396 WP_121609573.1 globin -
  D9829_RS02615 - 524987..525823 (+) 837 WP_121613746.1 ClpXP adapter SpxH family protein -
  D9829_RS28630 - 526130..526306 (+) 177 WP_162990113.1 hypothetical protein -
  D9829_RS02620 pepF 526349..528166 (-) 1818 WP_121609574.1 oligoendopeptidase F Regulator
  D9829_RS02625 - 528346..529542 (-) 1197 WP_121609575.1 competence protein CoiA -
  D9829_RS02630 mecA 529668..530339 (-) 672 WP_121609576.1 adaptor protein MecA -
  D9829_RS02635 spxA 530700..531095 (-) 396 WP_121609577.1 transcriptional regulator SpxA -
  D9829_RS02640 - 531529..532098 (-) 570 WP_121609578.1 N-acetyltransferase -
  D9829_RS02645 - 532275..532460 (+) 186 WP_121609579.1 hypothetical protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69921.59 Da        Isoelectric Point: 5.0404

>NTDB_id=320653 D9829_RS02620 WP_121609574.1 526349..528166(-) (pepF) [Mesobacillus foraminis strain Bac44]
MTNETKVKKLPARSEVPVEYTWKLEDIFASDEEWENEFQQVKELLPAVQEYQGKLGQSSEQLYSVLHYQDKLLERLGKLY
TYAHMRYDQDTANSFYQGLDDRIKNLYSQAGSSLAYIVPEILSIDEGKIKSFLEEKEELKLYEHALKEINLQRPHVLTAE
QEALLAGASEVMNSPSTTFGMLNNADLEFPAIKDENGEEVEITHGRYIRFLESEDRRVREDAFKGVYETYGKFRNTFAST
LSGNIKKDNFNARVRKYDSARHAALSANNIPESVYENLVSTINNNLHLLHRYVKLRRKVLGVDKLHMYDLYTPLVKNVKM
EITYPEAKDIILKGLAPMGEEYLGLLREGFENRWIDVQENKGKRSGAYSSGSYGTNPYILMNWQDNVNNLFTLAHELGHS
LHSYYTRNTQPYAYGSYSIFVAEVASTCNEALLNDYLLKSIDDEQKRLYLLNHYLEGFRGTVFRQTMFAEYEHLIHQKAQ
NNEALTADSLTEAYYDLNKKYFGQEDIEIDKEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYIDY
LKAGSSDYPIEVLKKAGVDMTSPKPIEDACKVFEEKLNEMESLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=320653 D9829_RS02620 WP_121609574.1 526349..528166(-) (pepF) [Mesobacillus foraminis strain Bac44]
ATGACCAACGAAACAAAGGTTAAGAAGCTTCCAGCCAGAAGCGAAGTGCCAGTTGAATATACGTGGAAGCTGGAAGACAT
ATTTGCCAGTGATGAGGAATGGGAAAACGAATTCCAGCAGGTAAAAGAGCTTTTGCCGGCAGTTCAGGAATACCAAGGGA
AATTAGGGCAAAGTTCCGAACAGCTGTACAGCGTTTTGCACTATCAGGATAAACTTCTGGAGCGGCTTGGCAAGCTGTAT
ACATATGCCCATATGAGGTATGACCAGGACACTGCCAACTCTTTTTATCAGGGGCTTGATGACCGGATCAAAAATTTATA
TTCGCAGGCAGGCAGCTCGCTCGCGTATATCGTTCCAGAGATACTATCGATTGATGAGGGGAAAATTAAATCCTTCCTGG
AAGAAAAAGAAGAATTAAAGCTATATGAACATGCACTCAAAGAAATTAACCTGCAGCGCCCCCATGTATTGACAGCAGAG
CAGGAAGCTTTATTAGCAGGAGCATCCGAAGTGATGAATTCTCCTTCCACGACCTTTGGGATGCTGAATAACGCCGATCT
TGAATTTCCGGCAATTAAGGATGAGAATGGGGAAGAAGTAGAAATTACCCACGGCCGCTATATTCGCTTTCTTGAAAGTG
AAGATCGAAGAGTGCGGGAGGATGCATTTAAAGGAGTATATGAGACTTACGGAAAGTTCCGGAACACCTTTGCAAGCACG
CTGAGCGGAAATATCAAGAAAGATAATTTCAATGCAAGAGTGCGCAAATACGATTCCGCGAGACATGCAGCATTATCAGC
TAATAATATACCAGAAAGCGTCTATGAGAATCTGGTCAGCACCATTAATAATAATCTTCACTTGCTCCACCGATATGTAA
AGCTTCGCCGCAAAGTTCTTGGGGTGGATAAACTTCATATGTATGATCTTTACACACCATTGGTGAAAAATGTGAAAATG
GAAATAACCTATCCAGAAGCCAAAGATATTATATTAAAAGGGCTGGCTCCAATGGGCGAAGAATATTTAGGCTTATTGAG
GGAAGGTTTTGAGAACCGCTGGATTGATGTCCAGGAGAACAAAGGGAAGCGCAGCGGGGCCTATTCTTCAGGTTCCTATG
GAACGAATCCATATATTCTGATGAACTGGCAGGACAATGTTAATAACTTATTTACCCTTGCACATGAACTGGGGCATTCC
CTTCACAGCTACTACACCAGAAACACGCAGCCTTATGCGTATGGAAGCTACTCCATTTTTGTAGCGGAAGTAGCTTCGAC
CTGTAACGAGGCGCTTCTGAATGATTATCTGTTAAAATCCATTGACGACGAACAAAAGCGTCTATATTTATTAAACCATT
ATCTTGAAGGCTTCCGCGGAACTGTCTTCCGGCAAACGATGTTTGCGGAATATGAGCACCTGATTCATCAAAAGGCCCAG
AATAATGAAGCATTGACGGCGGATTCATTGACAGAAGCCTATTACGATTTAAATAAGAAGTATTTTGGCCAGGAAGATAT
CGAAATAGACAAGGAAATTGGCCTTGAATGGTCGAGGATCCCTCATTTCTATTATAATTACTATGTGTATCAATATGCCA
CGGGCTTCAGTGCGGCTACAGCGCTAAGCAAACAAATACTTGAAGAGGGAGAACCGGCTGTCAAACGGTATATAGACTAC
CTGAAAGCCGGAAGTTCCGACTACCCAATTGAGGTGCTGAAGAAGGCTGGAGTGGATATGACAAGTCCCAAGCCAATTGA
AGATGCCTGCAAGGTGTTTGAAGAGAAGCTCAACGAAATGGAATCACTTCTTTCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.662

97.851

0.486

Multiple sequence alignment