Detailed information NTG0320642

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: FD987_RS05860
• Genome accession: NZ_CP040239
• Coordinates: 1148724..1149668 (+)
• Length: 314 a.a.
• NCBI ID: WP_002844797.1
• Uniprot ID: -
• Organism: Campylobacter coli strain S9
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1143724..1154668

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FD987_RS05840 (FD987_05840)	-	1144362..1145300 (-)	939	WP_002844801.1	NAD-dependent epimerase/dehydratase family protein	-
FD987_RS05845 (FD987_05845)	gmd	1145293..1146432 (-)	1140	WP_002844800.1	GDP-mannose 4,6-dehydratase	-
FD987_RS05850 (FD987_05850)	-	1146433..1147800 (-)	1368	WP_002844799.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
FD987_RS05855 (FD987_05855)	-	1147843..1148664 (-)	822	WP_002844798.1	glycosyltransferase family 2 protein	-
FD987_RS05860 (FD987_05860)	waaF	1148724..1149668 (+)	945	WP_002844797.1	lipopolysaccharide heptosyltransferase II	Regulator
FD987_RS05865 (FD987_05865)	-	1149661..1150425 (-)	765	WP_052777778.1	glycosyltransferase family 25 protein	-
FD987_RS05870 (FD987_05870)	gmhA	1150425..1150985 (-)	561	WP_052777779.1	D-sedoheptulose 7-phosphate isomerase	-
FD987_RS05875 (FD987_05875)	rfaE1	1150982..1152367 (-)	1386	WP_052777780.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
FD987_RS05880 (FD987_05880)	rfaD	1152360..1153313 (-)	954	WP_002796912.1	ADP-glyceromanno-heptose 6-epimerase	-
FD987_RS05885 (FD987_05885)	-	1153310..1153873 (-)	564	WP_052777781.1	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	-
FD987_RS05890 (FD987_05890)	-	1153950..1154249 (+)	300	WP_002777238.1	cytochrome c	-
FD987_RS05895 (FD987_05895)	-	1154279..1154479 (-)	201	WP_002777240.1	cbb3-type cytochrome oxidase assembly protein	-

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 36096.73 Da
• Isoelectric Point: 10.3770

>NTDB_id=320642 FD987_RS05860 WP_002844797.1 1148724..1149668(+) (waaF) [Campylobacter coli strain S9]
MKIFIHLPTWLGDAVMASPALYGVYHHFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQTLSLRKKLGKIDLALS
FRSALSSKIILHILKAKKRYFFNKYNFKEEHQVLKYLYFIENSLDIKAHSKDLKLPFRLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKMLCQNIIFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLACMPCMQKTCPLKHHQCMKDLKPEKILEAIRNFT

Nucleotide

• Length: 945 bp

>NTDB_id=320642 FD987_RS05860 WP_002844797.1 1148724..1149668(+) (waaF) [Campylobacter coli strain S9]
ATGAAAATTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATCA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAACCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCTCTTTCCTCTAAGATCATTTTGCATATCCTTAAGGCAAAAAAAAGATATTTTTTTAACAAGTATAATTT
CAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCACTAGATATCAAAGCTCATTCTAAGGATTTAA
AACTCCCTTTTAGATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGCTTAAATCCTGGAGCA
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGTTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCGGGCAAGGCAGAACAAGAACTTTGCGATGAAATTTTTCATATATTAAAAGAAAAAAATGTCAAGGTAA
AAAATCTTTGCAATAAAACCACCATCAAAATGCTTTGTCAAAATATCATTTTTTGTGATATCTTCATCACAAATGATAGT
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATCTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTAGCTTGTATGCCTTGCATGCAAAAAACCTGCCCTTTAAAAC
ATCATCAGTGTATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCGAAATTTTACTTAA

Domains

Predicted by InterProScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (108-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	82.748	99.682	0.825