Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   D9842_RS23495 Genome accession   NZ_CP033043
Coordinates   4801735..4802688 (+) Length   317 a.a.
NCBI ID   WP_121664537.1    Uniprot ID   -
Organism   Metabacillus litoralis strain Bac94     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4796735..4807688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9842_RS23485 - 4799891..4800520 (-) 630 WP_121664535.1 hypothetical protein -
  D9842_RS23490 - 4800545..4801201 (-) 657 WP_162987539.1 B12-binding domain-containing protein -
  D9842_RS23495 ceuB 4801735..4802688 (+) 954 WP_121664537.1 ABC transporter permease Machinery gene
  D9842_RS23500 - 4802678..4803631 (+) 954 WP_121664538.1 iron chelate uptake ABC transporter family permease subunit -
  D9842_RS23505 - 4803628..4804395 (+) 768 WP_121664539.1 ABC transporter ATP-binding protein -
  D9842_RS23510 - 4804612..4805658 (+) 1047 WP_121664540.1 siderophore ABC transporter substrate-binding protein -
  D9842_RS23515 - 4805796..4806377 (+) 582 WP_162987540.1 NAD(P)H-dependent oxidoreductase -
  D9842_RS23520 - 4806471..4807052 (+) 582 WP_373995132.1 class D sortase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34694.74 Da        Isoelectric Point: 9.1244

>NTDB_id=320638 D9842_RS23495 WP_121664537.1 4801735..4802688(+) (ceuB) [Metabacillus litoralis strain Bac94]
MRLWMLGIAAIVLSFISLFIGAIDITPMDLLNWDSDETHIFLISRIPRLIAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAARLGILISMLFFTNVTYTQQVIFSFAFALAGTFVFMQILDRIKFKDVIFVPLIGIMYGNILSSITTFLGYEADLL
QNLSSWLMGSFTLIISGRYELLYVSIPAVILAYIYANKFTVAGMGEDFAKNLGLSYKLILNIGLILVAIISTTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVLGVVFLLICDILGRIIIHPYEIPVNVTVAVIGSAIFLTMLLRGRAYAK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=320638 D9842_RS23495 WP_121664537.1 4801735..4802688(+) (ceuB) [Metabacillus litoralis strain Bac94]
ATGAGATTATGGATGCTAGGAATTGCAGCTATCGTCCTGTCTTTTATTTCGCTTTTCATCGGAGCAATTGATATTACACC
AATGGACTTGCTTAATTGGGATTCAGACGAAACACATATTTTCCTAATAAGCCGAATTCCACGTTTAATTGCGATTATAT
TAGCGGGGGCAGGGATGAGTATTGCCGGCTTAATTATGCAGTCTTTAAGCCGAAATAAATTTGTATCACCAACAACTGCT
GGGACATTAGACGCAGCAAGGCTAGGTATTTTAATTTCAATGCTATTTTTTACGAATGTAACATATACCCAGCAAGTTAT
TTTTAGTTTTGCTTTTGCATTGGCTGGAACATTCGTATTTATGCAGATTTTGGATCGTATAAAATTTAAAGATGTTATTT
TTGTTCCATTAATTGGAATTATGTATGGGAATATTTTATCTTCCATTACCACTTTTTTAGGGTATGAAGCTGATCTACTT
CAAAACCTCTCTTCCTGGCTCATGGGGAGCTTTACTTTGATTATTTCTGGTCGCTATGAACTTTTATATGTTAGTATTCC
AGCCGTTATTTTAGCTTATATTTATGCAAATAAATTTACAGTAGCCGGAATGGGAGAAGATTTTGCGAAGAATCTAGGCT
TAAGTTATAAGCTGATTCTAAATATTGGTCTTATTCTTGTTGCAATTATTTCAACAACAGTTGTTCTCACTGTTGGGGTT
ATTCCATTTTTGGGACTAATTGTACCAAATATTGTTTCTCTTTATTTAGGTGATAATTTACGCAAAACAATACCACATAC
CGCGGTATTGGGGGTTGTTTTCTTATTAATATGTGATATTTTAGGGCGGATCATTATTCACCCTTATGAGATTCCAGTTA
ATGTAACAGTGGCAGTGATAGGCAGTGCGATCTTCTTAACGATGCTACTTAGGGGGAGAGCATATGCGAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.814

94.953

0.53

Multiple sequence alignment