Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FD987_RS05460 Genome accession   NZ_CP040239
Coordinates   1067114..1067662 (+) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain S9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1062114..1072662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD987_RS05435 (FD987_05435) rseP 1062228..1063331 (+) 1104 WP_002777070.1 RIP metalloprotease RseP -
  FD987_RS05440 (FD987_05440) - 1063543..1064184 (+) 642 Protein_1057 DUF535 family protein -
  FD987_RS05445 (FD987_05445) - 1064177..1065178 (-) 1002 WP_002780256.1 sugar phosphate isomerase/epimerase -
  FD987_RS05450 (FD987_05450) - 1065183..1066448 (-) 1266 WP_023361983.1 MFS transporter -
  FD987_RS05455 (FD987_05455) rpsF 1066728..1067105 (+) 378 WP_002777082.1 30S ribosomal protein S6 -
  FD987_RS05460 (FD987_05460) ssb 1067114..1067662 (+) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  FD987_RS05465 (FD987_05465) rpsR 1067673..1067933 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  FD987_RS05470 (FD987_05470) lon 1067989..1070364 (-) 2376 WP_023361985.1 endopeptidase La -
  FD987_RS05475 (FD987_05475) - 1070380..1071027 (-) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  FD987_RS05480 (FD987_05480) fliW 1071191..1071580 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  FD987_RS05485 (FD987_05485) proC 1071580..1072317 (+) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  FD987_RS05490 (FD987_05490) ctsT 1072314..1072619 (+) 306 WP_002790525.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=320637 FD987_RS05460 WP_002777084.1 1067114..1067662(+) (ssb) [Campylobacter coli strain S9]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=320637 FD987_RS05460 WP_002777084.1 1067114..1067662(+) (ssb) [Campylobacter coli strain S9]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCGGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATTGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379

Multiple sequence alignment