Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D9842_RS20845 Genome accession   NZ_CP033043
Coordinates   4276459..4277835 (+) Length   458 a.a.
NCBI ID   WP_121664161.1    Uniprot ID   -
Organism   Metabacillus litoralis strain Bac94     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4271459..4282835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9842_RS20825 - 4271652..4272113 (+) 462 WP_121664157.1 CtsR family transcriptional regulator -
  D9842_RS20830 - 4272129..4272680 (+) 552 WP_121664158.1 UvrB/UvrC motif-containing protein -
  D9842_RS20835 - 4272681..4273778 (+) 1098 WP_121664159.1 protein arginine kinase -
  D9842_RS20840 clpC 4273775..4276222 (+) 2448 WP_121664160.1 ATP-dependent protease ATP-binding subunit ClpC -
  D9842_RS20845 radA 4276459..4277835 (+) 1377 WP_121664161.1 DNA repair protein RadA Machinery gene
  D9842_RS20850 disA 4277836..4278915 (+) 1080 WP_121664162.1 DNA integrity scanning diadenylate cyclase DisA -
  D9842_RS20855 - 4279114..4280211 (+) 1098 WP_121664163.1 PIN/TRAM domain-containing protein -
  D9842_RS20860 ispD 4280321..4281004 (+) 684 WP_121664164.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  D9842_RS20865 ispF 4281046..4281525 (+) 480 WP_121664165.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49562.04 Da        Isoelectric Point: 8.4638

>NTDB_id=320636 D9842_RS20845 WP_121664161.1 4276459..4277835(+) (radA) [Metabacillus litoralis strain Bac94]
MAKAKVKFICQTCGYESPKWMGKCPGCGEWNTMSEEVLKSGSPRRAVFAHSNQTVQKPSPITKIETTQEPRIFTNLKEFN
RVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSSQLADNGHDVLYISGEESVKQTKLRADRLGVKSNKLLVLSETDLSFISK
AIDETNPAFVVVDSIQTVYHSEISSAPGSVSQVRESTAELMRIAKTKGIAVFIVGHVTKEGSIAGPRLLEHMVDTVLYFE
GERHHTYRILRAVKNRFGSTNEMGIFEMKEAGLEEVQNPSEIFLEERSKGAAGSTVVASMEGTRSVLVEIQALISPTSFG
NPRRMATGIDHNRVPLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFKDAPPKPTDVIIGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRAVIPHANIGGWNPPDDIEIIGVKNVAEALQKTLGGS

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=320636 D9842_RS20845 WP_121664161.1 4276459..4277835(+) (radA) [Metabacillus litoralis strain Bac94]
ATGGCAAAAGCAAAGGTAAAGTTTATTTGTCAAACCTGTGGCTATGAATCACCGAAGTGGATGGGGAAATGCCCAGGTTG
TGGTGAATGGAATACAATGTCAGAAGAAGTATTAAAGTCTGGGTCACCTCGAAGGGCTGTTTTTGCTCATTCCAATCAAA
CGGTACAAAAACCCTCGCCGATAACAAAAATTGAAACAACCCAAGAACCAAGAATATTTACAAACCTTAAAGAATTTAAC
CGTGTACTCGGAAGTGGTATTGTGAAGGGATCTTTAGTTTTAATTGGTGGTGATCCTGGTATTGGGAAATCAACACTGCT
ATTACAAGTATCCTCTCAATTAGCTGATAACGGTCATGATGTTTTATATATATCTGGTGAAGAATCAGTTAAACAAACGA
AATTAAGGGCAGATCGCTTAGGAGTAAAATCTAATAAATTATTAGTTTTATCTGAAACAGACTTAAGCTTTATTTCAAAA
GCAATCGATGAAACAAACCCAGCCTTTGTAGTGGTCGATTCGATTCAAACTGTTTATCATAGTGAAATAAGCTCTGCTCC
GGGTAGTGTATCTCAAGTGAGAGAATCAACAGCTGAATTAATGAGAATAGCCAAAACAAAGGGTATTGCGGTATTCATTG
TTGGTCATGTAACGAAAGAGGGATCAATTGCAGGGCCAAGGCTATTAGAGCATATGGTTGATACAGTCCTCTATTTTGAA
GGAGAAAGACATCATACGTATCGAATATTACGTGCTGTAAAAAACCGCTTTGGGTCTACAAATGAGATGGGAATTTTCGA
AATGAAAGAAGCTGGTTTAGAAGAGGTGCAAAACCCATCAGAGATTTTTCTAGAAGAAAGGTCTAAGGGTGCAGCAGGTT
CAACAGTTGTTGCCTCAATGGAGGGTACCAGATCAGTGCTTGTTGAAATTCAGGCTCTTATCTCTCCGACCAGTTTTGGA
AATCCAAGGAGAATGGCAACTGGAATAGATCATAATCGAGTGCCATTGTTAATGGCTGTTTTAGAGAAACGTGTTGGTCT
TCTTTTGCAAAACCAGGATGCATATTTAAAGGTTGCCGGAGGCGTAAAGCTTGATGAACCTGCTATTGATTTAGCTGTTG
CTGTTAGTATTGCTTCTAGCTTTAAGGATGCGCCACCAAAACCGACTGACGTTATTATTGGGGAAGTGGGGTTAACAGGT
GAGGTTCGTAGAGTGTCGAGAATTGAACAAAGAGTGATTGAAGCTGCAAAGCTAGGTTTTAAGAGGGCGGTCATTCCACA
TGCAAATATAGGCGGTTGGAATCCACCAGATGATATAGAAATTATAGGAGTAAAAAATGTAGCAGAGGCCCTCCAAAAAA
CATTAGGGGGATCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

80.786

100

0.808
  radA Streptococcus mitis NCTC 12261

60.659

99.345

0.603
  radA Streptococcus mitis SK321

60.659

99.345

0.603
  radA Streptococcus pneumoniae Rx1

60.44

99.345

0.6
  radA Streptococcus pneumoniae D39

60.44

99.345

0.6
  radA Streptococcus pneumoniae R6

60.44

99.345

0.6
  radA Streptococcus pneumoniae TIGR4

60.44

99.345

0.6

Multiple sequence alignment