Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   FD987_RS03420 Genome accession   NZ_CP040239
Coordinates   663887..664267 (+) Length   126 a.a.
NCBI ID   WP_053875443.1    Uniprot ID   -
Organism   Campylobacter coli strain S9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 658887..669267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD987_RS03400 (FD987_03400) - 658996..660930 (-) 1935 WP_002776352.1 ribonuclease R family protein -
  FD987_RS03405 (FD987_03405) ilvC 661053..662075 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  FD987_RS03410 (FD987_03410) - 662078..663130 (+) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  FD987_RS03415 (FD987_03415) dprA 663120..663890 (+) 771 WP_002781662.1 DNA-processing protein DprA Machinery gene
  FD987_RS03420 (FD987_03420) dprB 663887..664267 (+) 381 WP_053875443.1 Holliday junction resolvase RuvX Machinery gene
  FD987_RS03425 (FD987_03425) - 664278..665132 (+) 855 WP_370450124.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  FD987_RS03430 (FD987_03430) msrA 665355..665855 (-) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  FD987_RS03435 (FD987_03435) ppa 665903..666421 (-) 519 WP_002776378.1 inorganic diphosphatase -
  FD987_RS03440 (FD987_03440) - 666431..667006 (-) 576 WP_002781658.1 adenylate kinase -
  FD987_RS03445 (FD987_03445) aspS 667003..668754 (-) 1752 WP_053875444.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13979.41 Da        Isoelectric Point: 9.5520

>NTDB_id=320630 FD987_RS03420 WP_053875443.1 663887..664267(+) (dprB) [Campylobacter coli strain S9]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDTKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=320630 FD987_RS03420 WP_053875443.1 663887..664267(+) (dprB) [Campylobacter coli strain S9]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATACCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421