Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FD987_RS03240 Genome accession   NZ_CP040239
Coordinates   623266..623841 (-) Length   191 a.a.
NCBI ID   WP_002776257.1    Uniprot ID   A0ABN0EQ59
Organism   Campylobacter coli strain S9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 618266..628841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD987_RS03220 (FD987_03220) - 619170..620309 (+) 1140 WP_002776249.1 hydrogenase small subunit -
  FD987_RS03225 (FD987_03225) - 620315..622030 (+) 1716 WP_002776252.1 nickel-dependent hydrogenase large subunit -
  FD987_RS03230 (FD987_03230) cybH 622042..622734 (+) 693 WP_058914651.1 Ni/Fe-hydrogenase, b-type cytochrome subunit -
  FD987_RS03235 (FD987_03235) - 622731..623264 (+) 534 WP_002780939.1 HyaD/HybD family hydrogenase maturation endopeptidase -
  FD987_RS03240 (FD987_03240) recR 623266..623841 (-) 576 WP_002776257.1 recombination mediator RecR Machinery gene
  FD987_RS03245 (FD987_03245) - 623831..625081 (-) 1251 WP_002776258.1 ArsS family sensor histidine kinase -
  FD987_RS03250 (FD987_03250) - 625078..625749 (-) 672 WP_002776259.1 response regulator transcription factor -
  FD987_RS03255 (FD987_03255) dnaJ 625896..627020 (+) 1125 WP_023361816.1 molecular chaperone DnaJ -
  FD987_RS03260 (FD987_03260) - 627160..628416 (-) 1257 WP_052774806.1 major outer membrane protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21732.15 Da        Isoelectric Point: 6.1072

>NTDB_id=320627 FD987_RS03240 WP_002776257.1 623266..623841(-) (recR) [Campylobacter coli strain S9]
MTHKGIEKFNELVESFAKLPTIGKKTAIRLAYHICTGNQLEGMKLAHNIENAIRFIKPCQQCGSLSENELCEICTDDERD
KNCLCIVQSPKDVLVIEESKSYGGLYFVLDELNDEKLAQLRQMILKLQSKELIFAFTHNLNSDAMIFYIEDRLKDLNLQF
SKIAQGIPSGVNLENVDFISLNKAINFRTKV

Nucleotide


Download         Length: 576 bp        

>NTDB_id=320627 FD987_RS03240 WP_002776257.1 623266..623841(-) (recR) [Campylobacter coli strain S9]
ATGACGCATAAGGGTATAGAAAAATTTAACGAACTTGTAGAAAGTTTTGCAAAATTACCCACTATCGGTAAAAAAACTGC
TATTCGCCTTGCTTATCATATTTGCACAGGAAATCAACTCGAAGGTATGAAGCTCGCACACAATATAGAAAATGCTATAC
GCTTTATAAAACCCTGTCAACAATGCGGGTCTTTAAGCGAAAACGAACTTTGTGAAATTTGCACCGATGATGAAAGGGAT
AAAAATTGCTTATGTATAGTGCAAAGCCCTAAAGATGTTTTGGTTATAGAAGAGAGTAAAAGTTATGGGGGCTTGTATTT
TGTTTTAGATGAATTAAACGATGAAAAGCTTGCTCAATTAAGACAAATGATACTAAAATTACAAAGCAAAGAACTCATTT
TTGCTTTCACTCATAATTTAAATTCCGATGCAATGATTTTTTATATAGAAGATAGGCTTAAAGATTTAAATTTACAATTT
AGCAAAATCGCACAAGGTATTCCAAGTGGAGTAAATTTAGAAAATGTTGACTTTATATCTCTAAACAAAGCCATCAATTT
TCGCACCAAAGTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(42-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

36.649

100

0.366