Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   FD746_RS05955 Genome accession   NZ_CP040232
Coordinates   1177097..1177810 (-) Length   237 a.a.
NCBI ID   WP_031768797.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GD1706     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1172097..1182810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD746_RS05920 (FD746_05950) - 1173040..1173214 (+) 175 Protein_1143 cytochrome d ubiquinol oxidase subunit II -
  FD746_RS05925 (FD746_05955) - 1173270..1174307 (-) 1038 WP_000857185.1 tyrosine-type recombinase/integrase -
  FD746_RS05930 (FD746_05960) - 1174370..1174612 (-) 243 WP_031901043.1 hypothetical protein -
  FD746_RS05935 (FD746_05965) - 1174623..1175606 (-) 984 WP_031901044.1 glycosyltransferase family 2 protein -
  FD746_RS05940 (FD746_05970) - 1175705..1175887 (-) 183 WP_000694772.1 hypothetical protein -
  FD746_RS05945 (FD746_05975) - 1176117..1176701 (-) 585 WP_031901045.1 hypothetical protein -
  FD746_RS05950 (FD746_05980) - 1176757..1176942 (-) 186 WP_000109193.1 hypothetical protein -
  FD746_RS14580 - 1176939..1177085 (-) 147 WP_001049401.1 hypothetical protein -
  FD746_RS05955 (FD746_05985) irvR 1177097..1177810 (-) 714 WP_031768797.1 XRE family transcriptional regulator Regulator
  FD746_RS05960 (FD746_05990) - 1177773..1177948 (+) 176 Protein_1152 transcriptional regulator -
  FD746_RS05965 (FD746_05995) - 1177945..1178214 (+) 270 WP_000854068.1 helix-turn-helix transcriptional regulator -
  FD746_RS05970 (FD746_06000) - 1178230..1179018 (+) 789 WP_031901046.1 phage antirepressor -
  FD746_RS05975 (FD746_06005) - 1179035..1179232 (+) 198 WP_001148861.1 hypothetical protein -
  FD746_RS05980 (FD746_06010) - 1179263..1179403 (+) 141 WP_000939496.1 hypothetical protein -
  FD746_RS05985 (FD746_06015) - 1179418..1180051 (-) 634 Protein_1157 hypothetical protein -
  FD746_RS05990 (FD746_06020) - 1180110..1180430 (+) 321 WP_001120197.1 DUF771 domain-containing protein -
  FD746_RS05995 (FD746_06025) - 1180427..1180588 (+) 162 WP_000066020.1 DUF1270 domain-containing protein -
  FD746_RS06000 (FD746_06030) - 1180681..1180984 (+) 304 Protein_1160 DUF2482 family protein -
  FD746_RS06005 (FD746_06035) - 1180989..1181249 (+) 261 WP_000291506.1 DUF1108 family protein -
  FD746_RS06010 (FD746_06040) - 1181258..1181521 (+) 264 WP_001205732.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27030.67 Da        Isoelectric Point: 5.4243

>NTDB_id=320474 FD746_RS05955 WP_031768797.1 1177097..1177810(-) (irvR) [Staphylococcus aureus strain GD1706]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQKNVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKEYDDLHFYRNESVRLIGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=320474 FD746_RS05955 WP_031768797.1 1177097..1177810(-) (irvR) [Staphylococcus aureus strain GD1706]
ATGAACAAAGAAAGAAATATAATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGAGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAAAAAACGTACTTAACTATGCAAATGAACAATTGGAAGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAGGAGAAAACTCCAGTTAACGTCAATGGTTGCGTCTCTGCTGGTGTAG
GAGAACGTTTACACGATGAAACGCTATTTACTGAAATGGTTAAAGGACCTATCCCCACACACGATTTAGCGTTAAAAGTA
AATGGTGATTCTATGGAACCTATGTTTAAAGACGGTGAAATTATATTCGTAGAGAAAACTCACAATATAAAGAATGGACA
AATTGGTATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTTGTTGAAGATGATAGATTGACTCTAGTTTCAC
TAAATAAAGAATACGATGATCTACACTTTTACAGGAACGAAAGTGTGAGGTTAATTGGAAAAGTTATTTTATAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(13-63)

Peptidase S24-like (Peptidase_S24)

(127-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.571

100

0.397