Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LLKF_RS00345 Genome accession   NC_013656
Coordinates   68201..68986 (-) Length   261 a.a.
NCBI ID   WP_012896943.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis KF147     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 63201..73986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLKF_RS00320 (LLKF_0057) - 63802..64971 (+) 1170 WP_012896941.1 ring-cleaving dioxygenase -
  LLKF_RS00325 (LLKF_0058) - 64982..65572 (+) 591 WP_003132255.1 flavin reductase family protein -
  LLKF_RS00330 (LLKF_0059) rpmG 65651..65800 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  LLKF_RS00335 (LLKF_0060) rpmF 65830..66003 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  LLKF_RS00340 (LLKF_0061) - 66367..68148 (+) 1782 WP_012896942.1 heavy metal translocating P-type ATPase -
  LLKF_RS00345 (LLKF_0062) spo0J 68201..68986 (-) 786 WP_012896943.1 ParB/RepB/Spo0J family partition protein Regulator
  LLKF_RS00350 (LLKF_0063) rarA 69042..70301 (-) 1260 WP_012896944.1 replication-associated recombination protein A Machinery gene
  LLKF_RS00355 (LLKF_0064) - 70345..70833 (-) 489 WP_012896945.1 GNAT family N-acetyltransferase -
  LLKF_RS00360 (LLKF_0065) - 70985..71452 (+) 468 WP_010905112.1 DUF3013 family protein -
  LLKF_RS00365 (LLKF_0066) - 71482..73035 (+) 1554 WP_012896946.1 ABC-F family ATP-binding cassette domain-containing protein -
  LLKF_RS00370 (LLKF_0068) - 73215..73445 (+) 231 WP_235187824.1 hypothetical protein -
  LLKF_RS00375 (LLKF_0069) - 73483..73971 (+) 489 WP_010905115.1 YdeI/OmpD-associated family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29683.56 Da        Isoelectric Point: 9.7196

>NTDB_id=32047 LLKF_RS00345 WP_012896943.1 68201..68986(-) (spo0J) [Lactococcus lactis subsp. lactis KF147]
MVEQITQLKLSTIVKNPYQPRLVFDEDKLKELANSIQENGVLQPIIVRKSKLVGYELLAGERRFQASKLAGLETIPAIIR
SYSDEEMMTLSILENLQRENLNPLEESKSLAQLADKLGMTHDQIAKALGKSRSYVSNLIRLLGLPDTILKHVENRDISPA
HARTLLAEKNPKKQLELVDKIIKEQLNVRALEAIIYGEEKVTDKSVSKLNINLFTDETEKELMKKLGNRVKIQANKKYQG
NLSIHFGNLDELEHLIKLLKK

Nucleotide


Download         Length: 786 bp        

>NTDB_id=32047 LLKF_RS00345 WP_012896943.1 68201..68986(-) (spo0J) [Lactococcus lactis subsp. lactis KF147]
ATGGTAGAACAAATCACTCAACTTAAGTTGTCAACAATTGTAAAAAACCCTTACCAGCCTCGTCTTGTTTTTGATGAGGA
TAAATTAAAAGAATTGGCTAATTCTATCCAAGAAAATGGCGTTTTACAACCCATAATCGTTCGTAAATCAAAACTTGTTG
GCTATGAGCTTTTAGCAGGTGAACGTCGGTTTCAAGCTTCAAAATTAGCTGGTTTAGAAACTATACCAGCAATTATTAGA
AGCTATTCTGATGAAGAAATGATGACTCTCTCAATTTTAGAAAATTTGCAGAGAGAAAATCTCAATCCACTAGAAGAGTC
CAAAAGCTTGGCACAACTGGCTGACAAATTGGGAATGACCCACGATCAAATCGCTAAGGCCCTTGGAAAATCAAGGTCTT
ATGTCTCTAATCTTATTCGTTTACTTGGTTTGCCTGACACAATTTTGAAGCATGTTGAAAATCGAGATATTTCACCTGCT
CACGCTAGAACACTTTTAGCTGAAAAAAATCCTAAAAAGCAATTAGAGCTCGTTGATAAAATAATTAAAGAGCAGCTCAA
TGTCAGAGCACTTGAAGCTATTATTTATGGTGAAGAAAAAGTTACTGACAAATCTGTCAGTAAATTAAATATCAATCTTT
TTACTGACGAAACTGAAAAAGAACTGATGAAAAAATTGGGAAATAGGGTTAAGATTCAAGCAAATAAAAAATATCAAGGG
AATTTATCCATTCACTTTGGTAATCTTGATGAACTAGAACATCTAATAAAATTACTAAAAAAATAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

48.047

98.084

0.471

Multiple sequence alignment