Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D9V54_RS14085 Genome accession   NZ_CP032992
Coordinates   2823513..2824142 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain W5-6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2818513..2829142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V54_RS14070 helD 2818755..2820809 (-) 2055 WP_001295354.1 DNA helicase IV -
  D9V54_RS14075 yccF 2820932..2821378 (+) 447 WP_001261235.1 YccF domain-containing protein -
  D9V54_RS14080 yccS 2821388..2823550 (+) 2163 WP_000875058.1 YccS family putative transporter -
  D9V54_RS14085 sxy/tfoX 2823513..2824142 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  D9V54_RS14090 sulA 2824361..2824870 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  D9V54_RS14095 ompA 2825227..2826267 (+) 1041 WP_001400178.1 porin OmpA -
  D9V54_RS14100 matP 2826343..2826795 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  D9V54_RS14105 ycbZ 2826981..2828741 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=320463 D9V54_RS14085 WP_000839153.1 2823513..2824142(-) (sxy/tfoX) [Escherichia coli strain W5-6]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=320463 D9V54_RS14085 WP_000839153.1 2823513..2824142(-) (sxy/tfoX) [Escherichia coli strain W5-6]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment