Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LLKF_RS00205 Genome accession   NC_013656
Coordinates   40281..41036 (+) Length   251 a.a.
NCBI ID   WP_012896923.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis KF147     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 35281..46036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLKF_RS00175 (LLKF_0028) - 35472..35921 (+) 450 WP_012896918.1 GNAT family N-acetyltransferase -
  LLKF_RS00180 (LLKF_0029) - 35998..36240 (+) 243 WP_012896919.1 TM2 domain-containing protein -
  LLKF_RS00185 (LLKF_0030) - 36323..37945 (-) 1623 WP_012896920.1 SulP family inorganic anion transporter -
  LLKF_RS00190 (LLKF_0031) - 38155..38676 (+) 522 WP_012896921.1 GNAT family N-acetyltransferase -
  LLKF_RS00200 (LLKF_0032) - 39007..40182 (+) 1176 WP_012896922.1 pyridoxal phosphate-dependent aminotransferase -
  LLKF_RS00205 (LLKF_0033) recO 40281..41036 (+) 756 WP_012896923.1 DNA repair protein RecO Machinery gene
  LLKF_RS13090 (LLKF_0034) - 41150..41323 (+) 174 WP_012896924.1 helix-turn-helix domain-containing protein -
  LLKF_RS00210 (LLKF_0035) lpdA 41394..42812 (-) 1419 WP_010905074.1 dihydrolipoyl dehydrogenase -
  LLKF_RS00215 (LLKF_0036) - 43006..44604 (-) 1599 WP_012896925.1 2-oxo acid dehydrogenase subunit E2 -
  LLKF_RS00220 (LLKF_0037) - 44597..45577 (-) 981 WP_010905076.1 alpha-ketoacid dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28745.98 Da        Isoelectric Point: 5.9537

>NTDB_id=32046 LLKF_RS00205 WP_012896923.1 40281..41036(+) (recO) [Lactococcus lactis subsp. lactis KF147]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSVWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=32046 LLKF_RS00205 WP_012896923.1 40281..41036(+) (recO) [Lactococcus lactis subsp. lactis KF147]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCCCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTAATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGTTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.472

98.008

0.534

Multiple sequence alignment