Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D9V55_RS15620 Genome accession   NZ_CP032989
Coordinates   3095060..3095689 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain W2-5     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3090060..3100689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V55_RS15605 helD 3090302..3092356 (-) 2055 WP_000420533.1 DNA helicase IV -
  D9V55_RS15610 yccF 3092479..3092925 (+) 447 WP_001261231.1 YccF domain-containing protein -
  D9V55_RS15615 yccS 3092935..3095097 (+) 2163 WP_000875023.1 YccS family putative transporter -
  D9V55_RS15620 sxy/tfoX 3095060..3095689 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  D9V55_RS15625 sulA 3095908..3096417 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  D9V55_RS15630 ompA 3096774..3097826 (+) 1053 WP_000750419.1 porin OmpA -
  D9V55_RS26350 matP 3097901..3098354 (-) 454 Protein_2971 macrodomain Ter protein MatP -
  D9V55_RS15640 ycbZ 3098540..3100300 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=320442 D9V55_RS15620 WP_000839153.1 3095060..3095689(-) (sxy/tfoX) [Escherichia coli strain W2-5]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=320442 D9V55_RS15620 WP_000839153.1 3095060..3095689(-) (sxy/tfoX) [Escherichia coli strain W2-5]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment