Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FD491_RS12895 Genome accession   NZ_CP040230
Coordinates   2642009..2642479 (-) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain GD1108     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2637009..2647479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD491_RS12865 (FD491_10810) - 2637049..2637462 (+) 414 WP_001123309.1 DUF393 domain-containing protein -
  FD491_RS12870 (FD491_10805) - 2637662..2638105 (+) 444 WP_000070865.1 Dps family protein -
  FD491_RS12875 (FD491_10800) deoD 2638226..2638936 (-) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  FD491_RS12880 (FD491_10795) deoC 2639250..2639912 (+) 663 WP_001083328.1 deoxyribose-phosphate aldolase -
  FD491_RS12885 (FD491_10790) - 2640192..2641493 (+) 1302 WP_001242303.1 pyrimidine-nucleoside phosphorylase -
  FD491_RS12890 (FD491_10785) - 2641507..2641857 (+) 351 WP_001024035.1 membrane protein -
  FD491_RS12895 (FD491_10780) luxS 2642009..2642479 (-) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  FD491_RS12900 (FD491_10775) - 2642788..2643972 (+) 1185 WP_001291508.1 M20 family metallopeptidase -
  FD491_RS12905 (FD491_10770) - 2643972..2645165 (+) 1194 WP_000183714.1 hypothetical protein -
  FD491_RS12910 (FD491_10765) - 2645564..2646235 (+) 672 WP_000120549.1 DUF2750 domain-containing protein -
  FD491_RS12915 (FD491_10760) coaW 2646365..2647168 (-) 804 WP_000862732.1 type II pantothenate kinase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=320437 FD491_RS12895 WP_000164421.1 2642009..2642479(-) (luxS) [Staphylococcus aureus strain GD1108]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=320437 FD491_RS12895 WP_000164421.1 2642009..2642479(-) (luxS) [Staphylococcus aureus strain GD1108]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCAG
GATTGCATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTCGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCAGCTTGTAATGAAGTACAATGTGGCTGGGCAGCTAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404