Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECSF_RS22430 Genome accession   NC_013654
Coordinates   4591492..4591968 (+) Length   158 a.a.
NCBI ID   WP_001186779.1    Uniprot ID   -
Organism   Escherichia coli SE15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4586492..4596968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECSF_RS22400 (ECSF_4205) - 4587567..4589468 (+) 1902 Protein_4277 Ag43/Cah family autotransporter adhesin -
  ECSF_RS22405 (ECSF_4206) - 4589539..4589734 (+) 196 Protein_4278 DUF905 family protein -
  ECSF_RS22415 (ECSF_4207) - 4589852..4590670 (+) 819 WP_001234712.1 DUF932 domain-containing protein -
  ECSF_RS22425 - 4591012..4591476 (+) 465 WP_000855061.1 antirestriction protein -
  ECSF_RS22430 (ECSF_4209) radC 4591492..4591968 (+) 477 WP_001186779.1 JAB domain-containing protein Machinery gene
  ECSF_RS22435 (ECSF_4210) - 4592031..4592252 (+) 222 WP_001220314.1 DUF987 domain-containing protein -
  ECSF_RS22445 (ECSF_4211) - 4592415..4592783 (+) 369 WP_001280950.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECSF_RS22450 (ECSF_4212) - 4592872..4593249 (+) 378 WP_000854770.1 TA system toxin CbtA family protein -
  ECSF_RS22455 (ECSF_4213) - 4593246..4593734 (+) 489 WP_000761690.1 DUF5983 family protein -
  ECSF_RS22460 (ECSF_4214) - 4593751..4593927 (+) 177 WP_000839286.1 DUF957 domain-containing protein -
  ECSF_RS26680 - 4594033..4594182 (+) 150 Protein_4287 hypothetical protein -
  ECSF_RS26815 - 4594152..4594286 (+) 135 Protein_4288 transcriptional regulator -
  ECSF_RS26820 (ECSF_4215) - 4594549..4594854 (+) 306 Protein_4289 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17635.23 Da        Isoelectric Point: 7.2523

>NTDB_id=32042 ECSF_RS22430 WP_001186779.1 4591492..4591968(+) (radC) [Escherichia coli SE15]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLLLNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALHHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=32042 ECSF_RS22430 WP_001186779.1 4591492..4591968(+) (radC) [Escherichia coli SE15]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGCTTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGCACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGTCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment