Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D8675_RS24005 Genome accession   NZ_CP032916
Coordinates   4736829..4737455 (-) Length   208 a.a.
NCBI ID   WP_023618860.1    Uniprot ID   A0A155YQ93
Organism   Enterobacter roggenkampii strain ECY546     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4731829..4742455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8675_RS23990 (D8675_24085) helD 4732066..4734120 (-) 2055 WP_045372990.1 DNA helicase IV -
  D8675_RS23995 (D8675_24090) - 4734244..4734690 (+) 447 WP_008499924.1 YccF domain-containing protein -
  D8675_RS24000 (D8675_24095) yccS 4734710..4736872 (+) 2163 WP_045372992.1 YccS family putative transporter -
  D8675_RS24005 (D8675_24100) sxy/tfoX 4736829..4737455 (-) 627 WP_023618860.1 TfoX/Sxy family DNA transformation protein Regulator
  D8675_RS24010 (D8675_24105) sulA 4737673..4738182 (+) 510 WP_023618859.1 SOS-induced cell division inhibitor SulA -
  D8675_RS24015 (D8675_24110) ompA 4738537..4739592 (+) 1056 WP_023292865.1 porin OmpA -
  D8675_RS24020 (D8675_24115) matP 4739657..4740109 (-) 453 WP_023327041.1 macrodomain Ter protein MatP -
  D8675_RS24025 (D8675_24120) - 4740296..4742056 (+) 1761 WP_023327040.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23898.49 Da        Isoelectric Point: 9.6439

>NTDB_id=320386 D8675_RS24005 WP_023618860.1 4736829..4737455(-) (sxy/tfoX) [Enterobacter roggenkampii strain ECY546]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=320386 D8675_RS24005 WP_023618860.1 4736829..4737455(-) (sxy/tfoX) [Enterobacter roggenkampii strain ECY546]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCGTTGGGCGAGATTCATCATCGCGCGCT
CTTTGGCGGTTACACCCTGGCAGTGGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGAACTTTACCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTCTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGTCATCAACGAAACCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCCGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGCGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAGGCACTCAGTATAAAAGTGCTCTTTGCGCTGGAAGGGGCTATCGAAGGGCTGCATGAGGCGGCACTCCCGGCAGGTAT
CCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAGTCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A155YQ93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567

Multiple sequence alignment