Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   D4G81_RS00010 Genome accession   NZ_CP032913
Coordinates   1589..3028 (+) Length   479 a.a.
NCBI ID   WP_139523796.1    Uniprot ID   -
Organism   Helicobacter pylori strain 5-A-EK1     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4G81_RS00005 dnaA 1..1368 (+) 1368 WP_139523795.1 chromosomal replication initiator protein DnaA -
  D4G81_RS00010 comH 1589..3028 (+) 1440 WP_139523796.1 competence protein Machinery gene
  D4G81_RS00020 - 3208..3960 (+) 753 WP_139523797.1 exodeoxyribonuclease III -
  D4G81_RS00025 - 3957..4592 (-) 636 WP_000668031.1 outer membrane protein -
  D4G81_RS00030 - 4596..4943 (-) 348 WP_139523798.1 hypothetical protein -
  D4G81_RS00035 recG 5025..6896 (+) 1872 WP_139523799.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54866.57 Da        Isoelectric Point: 6.7221

>NTDB_id=320345 D4G81_RS00010 WP_139523796.1 1589..3028(+) (comH) [Helicobacter pylori strain 5-A-EK1]
MKKSLCLSFFLTFSNSLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHAHQMPSLNAPMQKPQNKPHSSQQPSQNFSYPESKLGSKNSKNSLLQPL
AIPSKISSTNETQTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTSNADINENNESNENRDNVEKQAIRDPNIKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQNFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAVYERPKQDDQVEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=320345 D4G81_RS00010 WP_139523796.1 1589..3028(+) (comH) [Helicobacter pylori strain 5-A-EK1]
ATGAAAAAATCCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACTCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATTAAAACTTCACCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATTGTTTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCACGCGCACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAGCCCCATTCATCGC
AACAACCTTCTCAAAACTTTTCTTACCCAGAGTCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GCAATTCCTAGCAAAATAAGCTCCACTAACGAAACTCAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACCGAAAAAACACTCCCTAACAACACCTCTAACGCTGATATTA
ATGAAAACAATGAAAGTAACGAAAATAGGGATAATGTGGAAAAACAAGCCATTAGAGATCCTAATATTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGACGATGAAAATTTACAAGCTTACCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTACACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAAATTTTGAAGCTAAAAACAATTTTACGATTCTTCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCTAGAGCGCGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGTGAGTATGAAATCACCACGCAATTAGTAAAAGCCGTATATGAACGCCCTAAACAAGACGATC
AAGTAGAGCCAACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAAAGAGAGCAGCGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGCCTTAGAAATAGAAGAGCAGCCACGAG
CTAAAAGCACGCCTTTGAGCATTGAAAACTCTCGTGTGGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

97.077

100

0.971

Multiple sequence alignment