Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   D4H18_RS00010 Genome accession   NZ_CP032912
Coordinates   1596..3035 (+) Length   479 a.a.
NCBI ID   WP_139522354.1    Uniprot ID   -
Organism   Helicobacter pylori strain 13-A-EK8     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H18_RS00005 dnaA 1..1368 (+) 1368 WP_139522353.1 chromosomal replication initiator protein DnaA -
  D4H18_RS00010 comH 1596..3035 (+) 1440 WP_139522354.1 competence protein Machinery gene
  D4H18_RS00020 - 3215..3967 (+) 753 WP_050840324.1 exodeoxyribonuclease III -
  D4H18_RS00025 - 3964..4599 (-) 636 WP_000668039.1 outer membrane protein -
  D4H18_RS00030 - 4603..4950 (-) 348 WP_139522355.1 hypothetical protein -
  D4H18_RS00035 recG 5032..6897 (+) 1866 WP_139522356.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54818.79 Da        Isoelectric Point: 6.7660

>NTDB_id=320325 D4H18_RS00010 WP_139522354.1 1596..3035(+) (comH) [Helicobacter pylori strain 13-A-EK8]
MKKTLCLSFFLTFSNPLQALVIELLEEIKISPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPAIPRNTQIVFSSKELKEAHAHQMPSLNAPMQKPQNKPSSSQQSPQNFSYPEPKLGSKNSKNSLLQPL
AIPSKISPTNETQTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTSNADISENNESNENKDNVEKQAIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRVDEDRQTATDITPCDYSTAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQVDPTFYETSELAYSSTRKSEITRNEL
NLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=320325 D4H18_RS00010 WP_139522354.1 1596..3035(+) (comH) [Helicobacter pylori strain 13-A-EK8]
ATGAAAAAAACCCTTTGTTTATCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAATTTCCCCTCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACTTTAAACCCCAACCGCCCTGCTATCCCTAGAAACACCCAAATCGTTTTTTCTTCAAAAGA
ATTGAAAGAAGCACACGCGCACCAAATGCCTTCTTTAAACGCACCCATGCAAAAACCACAAAATAAACCCAGCTCATCGC
AACAATCTCCTCAAAACTTTTCTTACCCAGAGCCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GCAATTCCTAGCAAAATAAGCCCCACTAACGAAACTCAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACCGAAAAAACGCTCCCTAACAACACTTCTAACGCTGATATTA
GTGAAAATAATGAAAGCAATGAGAATAAGGATAATGTGGAAAAACAAGCCATTAGAGATCCCAATGTTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGACGATGAAAATTTACAAGCTTACCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAGACA
GACTGCGACAGATATTACCCCTTGCGATTACAGCACCGCCGAAAATAAAAGCGGTAAAATCATTACCCCTTATACTAAAA
TCTCCGTTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGA
AGCTCTACGGAAAAATGCAAAAGGGCTAGAGCCAGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAGCGCCCCAAACAAGACGATC
AAGTAGATCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCGCAACGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGCATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

96.451

100

0.965

Multiple sequence alignment