Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   D4H43_RS07460 Genome accession   NZ_CP032911
Coordinates   1530519..1531832 (-) Length   437 a.a.
NCBI ID   WP_201737095.1    Uniprot ID   -
Organism   Helicobacter pylori strain 19-A-EK3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1525519..1536832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H43_RS07425 - 1525829..1525957 (-) 129 Protein_1425 adenine specific DNA methyltransferase -
  D4H43_RS07430 nadC 1525982..1526803 (-) 822 WP_139544514.1 carboxylating nicotinate-nucleotide diphosphorylase -
  D4H43_RS07435 nadA 1526803..1527813 (-) 1011 WP_139544515.1 quinolinate synthase NadA -
  D4H43_RS07440 - 1527803..1528606 (-) 804 WP_139544516.1 phosphatidylserine decarboxylase -
  D4H43_RS07445 - 1528600..1529106 (-) 507 WP_000953110.1 hypothetical protein -
  D4H43_RS07450 - 1529119..1529613 (-) 495 WP_162979768.1 hypothetical protein -
  D4H43_RS07455 mqnP 1529606..1530448 (-) 843 WP_236633637.1 menaquinone biosynthesis prenyltransferase MqnP -
  D4H43_RS07460 comEC/comE3 1530519..1531832 (-) 1314 WP_201737095.1 ComEC/Rec2 family competence protein Machinery gene
  D4H43_RS07465 - 1531829..1533295 (-) 1467 WP_097688775.1 replicative DNA helicase -
  D4H43_RS07470 - 1533306..1534700 (-) 1395 WP_139544519.1 NAD(P)H-hydrate dehydratase -
  D4H43_RS07475 crdS 1534703..1535905 (-) 1203 WP_139544520.1 copper-sensing histidine kinase CrdS -
  D4H43_RS07480 crdR 1535871..1536512 (-) 642 WP_108341526.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50294.25 Da        Isoelectric Point: 9.8163

>NTDB_id=320315 D4H43_RS07460 WP_201737095.1 1530519..1531832(-) (comEC/comE3) [Helicobacter pylori strain 19-A-EK3]
MKDKTFQGAFELLTTLKEYLWCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKSCSFLESLKSCFFQTYSFSLTRKHNFKSHLRHFIDSAHENALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFWMRSFQAISLS
ALVFLNMLIVVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHILSMPLTIPTISISSPLWLLGAHLFLT
ILSVRFFKVYLSMNVLNAGFFLYCCCQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=320315 D4H43_RS07460 WP_201737095.1 1530519..1531832(-) (comEC/comE3) [Helicobacter pylori strain 19-A-EK3]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCTCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATTCTATTACAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAGATCAAATCTTGCTC
GTTCTTAGAATCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACACAATTTCAAATCGCATT
TGCGCCATTTCATTGACAGCGCTCATGAAAACGCTTTAGTGGGTAATTTGTATCGAGCGTTATTCATAGGGGATAGCTTG
AATAAAGATTTGAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTTTCGCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCCATAGCTTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATTT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTGGATGCGATCTTTTCAAGCCATAAGCTTAAGC
GCACTGGTGTTTTTGAACATGCTCATTGTCGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTATTGGATCATA
TTTTAAGCATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTTTAAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAACGCGGGCTTTTTCTTGTATTGTTGCTGTCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952

Multiple sequence alignment