Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   D4H43_RS00010 Genome accession   NZ_CP032911
Coordinates   1597..3039 (+) Length   480 a.a.
NCBI ID   WP_139543622.1    Uniprot ID   -
Organism   Helicobacter pylori strain 19-A-EK3     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H43_RS00005 dnaA 1..1368 (+) 1368 WP_139543621.1 chromosomal replication initiator protein DnaA -
  D4H43_RS00010 comH 1597..3039 (+) 1443 WP_139543622.1 competence protein Machinery gene
  D4H43_RS00020 - 3220..3972 (+) 753 WP_139543623.1 exodeoxyribonuclease III -
  D4H43_RS00025 - 3969..4604 (-) 636 WP_139548764.1 outer membrane protein -
  D4H43_RS00030 - 4608..4955 (-) 348 WP_139543624.1 hypothetical protein -
  D4H43_RS00035 recG 5037..6908 (+) 1872 WP_139543625.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 54925.86 Da        Isoelectric Point: 6.7221

>NTDB_id=320302 D4H43_RS00010 WP_139543622.1 1597..3039(+) (comH) [Helicobacter pylori strain 19-A-EK3]
MKNPFVCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLD
EKLSLETTLSPNRPTIPRNTQIVFSSKELKEAHAHQMPSLNAPMQKPQNKPSSSQQSPQNFSYPEPKLGSKNSKNSLLQP
LAIPSKISPTNEVKTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTSNADISENNESNENRDNVEKQAIRDPNVKEF
ACGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSHAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFTILQA
RSSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQVEPTFYETSELAYSSTRKSEITHNE
LNLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=320302 D4H43_RS00010 WP_139543622.1 1597..3039(+) (comH) [Helicobacter pylori strain 19-A-EK3]
ATGAAAAATCCCTTTGTCTGTCTTTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGA
AGAGATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCG
TTTATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATTGTTTATCAACCCCTTGAT
GAAAAACTTTCTTTAGAAACGACCTTAAGCCCTAACCGCCCTACTATCCCTAGAAACACCCAAATCGTTTTTTCTTCAAA
AGAATTGAAAGAAGCGCACGCGCACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAACCCAGCTCAT
CGCAACAATCTCCTCAAAACTTTTCTTATCCAGAGCCAAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAACCT
TTAGCAATTCCTAGCAAAATAAGTCCCACTAACGAAGTTAAAACGCCAACAAACGACACCAAACCCCCTTTAAAGCATTC
TTCAGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACCGAAAAAACGCTCCCTAACAACACCTCTAACGCTGATA
TTAGTGAAAACAATGAAAGCAATGAGAATAGGGATAATGTGGAAAAACAAGCCATTAGAGATCCTAATGTTAAAGAATTT
GCGTGCGGGAAGTGGGTCTATGACGATGAAAATTTACAAGCCTACCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAA
ACAGACTGCGACAGATATTACCCCTTGCGATTACAGCCACGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACTA
AAATCTCCGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACAATTCTTCAAGCC
AGAAGCTCTACGGAAAAATGCAAAAGAGCTAGAGCAAGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCC
TTTAAAACAAGCATGGGAAAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAGCGCCCCAAACAAGACG
ATCAAGTAGAGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCACAACGAA
TTGAATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAAAGAAAGCAG
CGAATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGCTTTAGAAATAGAAGAACAGCCAC
GAGCCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTT
TAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

96.632

98.958

0.956

Multiple sequence alignment