Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   D4H71_RS07430 Genome accession   NZ_CP032910
Coordinates   1505556..1505837 (-) Length   93 a.a.
NCBI ID   WP_139548609.1    Uniprot ID   -
Organism   Helicobacter pylori strain 20-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1500556..1510837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H71_RS07410 - 1501286..1502626 (-) 1341 WP_201736972.1 hypothetical protein -
  D4H71_RS07420 comB4 1502928..1505291 (-) 2364 WP_139548608.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4H71_RS07425 comB3 1505293..1505556 (-) 264 WP_000584973.1 hypothetical protein Machinery gene
  D4H71_RS07430 comB2 1505556..1505837 (-) 282 WP_139548609.1 TrbC/VirB2 family protein Machinery gene
  D4H71_RS07435 - 1505982..1506809 (-) 828 WP_139548610.1 DUF5718 family protein -
  D4H71_RS07440 - 1506899..1507951 (-) 1053 WP_139548611.1 MnmA/TRMU family protein -
  D4H71_RS07445 dnaG 1507948..1509627 (-) 1680 WP_139548612.1 DNA primase -
  D4H71_RS07450 groES 1509912..1510268 (+) 357 WP_000671934.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10558.86 Da        Isoelectric Point: 9.9479

>NTDB_id=320301 D4H71_RS07430 WP_139548609.1 1505556..1505837(-) (comB2) [Helicobacter pylori strain 20-A-EK1]
MSARFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=320301 D4H71_RS07430 WP_139548609.1 1505556..1505837(-) (comB2) [Helicobacter pylori strain 20-A-EK1]
ATGTCCGCTCGTTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTGGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(5-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978

Multiple sequence alignment