Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   D4H71_RS07425 Genome accession   NZ_CP032910
Coordinates   1505293..1505556 (-) Length   87 a.a.
NCBI ID   WP_000584973.1    Uniprot ID   G2MDJ4
Organism   Helicobacter pylori strain 20-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1500293..1510556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H71_RS07410 - 1501286..1502626 (-) 1341 WP_201736972.1 hypothetical protein -
  D4H71_RS07420 comB4 1502928..1505291 (-) 2364 WP_139548608.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4H71_RS07425 comB3 1505293..1505556 (-) 264 WP_000584973.1 hypothetical protein Machinery gene
  D4H71_RS07430 comB2 1505556..1505837 (-) 282 WP_139548609.1 TrbC/VirB2 family protein Machinery gene
  D4H71_RS07435 - 1505982..1506809 (-) 828 WP_139548610.1 DUF5718 family protein -
  D4H71_RS07440 - 1506899..1507951 (-) 1053 WP_139548611.1 MnmA/TRMU family protein -
  D4H71_RS07445 dnaG 1507948..1509627 (-) 1680 WP_139548612.1 DNA primase -
  D4H71_RS07450 groES 1509912..1510268 (+) 357 WP_000671934.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10034.13 Da        Isoelectric Point: 9.5290

>NTDB_id=320300 D4H71_RS07425 WP_000584973.1 1505293..1505556(-) (comB3) [Helicobacter pylori strain 20-A-EK1]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=320300 D4H71_RS07425 WP_000584973.1 1505293..1505556(-) (comB3) [Helicobacter pylori strain 20-A-EK1]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGTGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

98.851

100

0.989

Multiple sequence alignment