Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   D4H71_RS05780 Genome accession   NZ_CP032910
Coordinates   1175895..1176299 (-) Length   134 a.a.
NCBI ID   WP_097682372.1    Uniprot ID   -
Organism   Helicobacter pylori strain 20-A-EK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1170895..1181299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H71_RS05730 - 1170991..1172220 (-) 1230 WP_201736964.1 hypothetical protein -
  D4H71_RS05740 - 1172210..1172995 (-) 786 WP_139548408.1 hypothetical protein -
  D4H71_RS05745 - 1172995..1173376 (-) 382 Protein_1095 DUF1294 domain-containing protein -
  D4H71_RS05755 - 1173678..1173944 (-) 267 Protein_1096 lysozyme -
  D4H71_RS05765 - 1174361..1174927 (-) 567 WP_139548409.1 hypothetical protein -
  D4H71_RS05770 - 1174911..1175216 (-) 306 WP_000699933.1 hypothetical protein -
  D4H71_RS05775 - 1175401..1175760 (-) 360 WP_139548410.1 tetratricopeptide repeat protein -
  D4H71_RS05780 dprB 1175895..1176299 (-) 405 WP_097682372.1 Holliday junction resolvase RuvX Machinery gene
  D4H71_RS05785 dprA 1176296..1177096 (-) 801 WP_139548411.1 DNA-processing protein DprA Machinery gene
  D4H71_RS05790 minE 1177103..1177336 (-) 234 WP_000051425.1 cell division topological specificity factor MinE -
  D4H71_RS05795 minD 1177333..1178139 (-) 807 WP_139548412.1 septum site-determining protein MinD -
  D4H71_RS05800 ilvC 1178163..1179155 (-) 993 WP_139548413.1 ketol-acid reductoisomerase -
  D4H71_RS05810 - 1179404..1180186 (+) 783 WP_139548414.1 NAD+ synthase -
  D4H71_RS05815 - 1180183..1181121 (+) 939 WP_139548415.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15234.60 Da        Isoelectric Point: 8.2836

>NTDB_id=320291 D4H71_RS05780 WP_097682372.1 1175895..1176299(-) (dprB) [Helicobacter pylori strain 20-A-EK1]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPSENYADTNIRIEHFIKLVDFKGE
IVFINEDNSSIEAYDNLEHLGRKNKRLATKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=320291 D4H71_RS05780 WP_097682372.1 1175895..1176299(-) (dprB) [Helicobacter pylori strain 20-A-EK1]
ATGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATTGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGAGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAACCTAGTGAAAATTATGCGGATACGAATATCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCCAGCATAGAAGCTTATGATAATTTAGAGCATTTGGGTAGGAAAAATAAGCGGCT
CGCTACCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAACAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.03

100

0.94

Multiple sequence alignment