Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | D4H71_RS00275 | Genome accession | NZ_CP032910 |
| Coordinates | 61965..62540 (+) | Length | 191 a.a. |
| NCBI ID | WP_139547750.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 20-A-EK1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 56965..67540
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4H71_RS00250 | uvrD | 57656..59701 (+) | 2046 | WP_201737006.1 | DNA helicase UvrD | - |
| D4H71_RS00255 | flgA | 59698..60354 (+) | 657 | WP_139547748.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| D4H71_RS00260 | - | 60364..60927 (+) | 564 | WP_078245262.1 | UbiX family flavin prenyltransferase | - |
| D4H71_RS00265 | coaD | 60927..61400 (+) | 474 | WP_108338335.1 | pantetheine-phosphate adenylyltransferase | - |
| D4H71_RS00270 | tmk | 61402..61977 (+) | 576 | WP_139547749.1 | dTMP kinase | - |
| D4H71_RS00275 | comFC | 61965..62540 (+) | 576 | WP_139547750.1 | ComF family protein | Machinery gene |
| D4H71_RS00280 | - | 62573..64609 (+) | 2037 | WP_139547751.1 | N-6 DNA methylase | - |
| D4H71_RS08265 | - | 64606..65229 (+) | 624 | WP_139547752.1 | restriction endonuclease subunit S | - |
| D4H71_RS08270 | - | 65256..65786 (+) | 531 | WP_139547753.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21451.98 Da Isoelectric Point: 8.9024
>NTDB_id=320283 D4H71_RS00275 WP_139547750.1 61965..62540(+) (comFC) [Helicobacter pylori strain 20-A-EK1]
MRCLTCLKLSFKPLCPNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVRILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRTNNPRDFTFKGDENLDYFLLDDII
TTGATLKEALKHLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVRILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRTNNPRDFTFKGDENLDYFLLDDII
TTGATLKEALKHLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=320283 D4H71_RS00275 WP_139547750.1 61965..62540(+) (comFC) [Helicobacter pylori strain 20-A-EK1]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAACCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAGAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCAAAGAATTTGTGAGAATCTTACAAGAACAAGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGCCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAACAACGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCACCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCGCCACTCTAAAAGAAGCCCTAAAACACCTTAAAACCCTAAACATTAAAGCACACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAACCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAGAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCAAAGAATTTGTGAGAATCTTACAAGAACAAGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGCCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAACAACGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCACCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCGCCACTCTAAAAGAAGCCCTAAAACACCTTAAAACCCTAAACATTAAAGCACACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.764 |
100 |
0.948 |