Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   D4H71_RS00010 Genome accession   NZ_CP032910
Coordinates   1599..3038 (+) Length   479 a.a.
NCBI ID   WP_139547708.1    Uniprot ID   -
Organism   Helicobacter pylori strain 20-A-EK1     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H71_RS00005 dnaA 1..1368 (+) 1368 WP_139547707.1 chromosomal replication initiator protein DnaA -
  D4H71_RS00010 comH 1599..3038 (+) 1440 WP_139547708.1 competence protein Machinery gene
  D4H71_RS00020 - 3218..3970 (+) 753 WP_139547709.1 exodeoxyribonuclease III -
  D4H71_RS00025 - 3967..4602 (-) 636 WP_000668039.1 outer membrane protein -
  D4H71_RS00030 - 4606..4953 (-) 348 WP_024118477.1 hypothetical protein -
  D4H71_RS00035 recG 5035..6906 (+) 1872 WP_139547710.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54798.90 Da        Isoelectric Point: 7.6680

>NTDB_id=320282 D4H71_RS00010 WP_139547708.1 1599..3038(+) (comH) [Helicobacter pylori strain 20-A-EK1]
MKKSLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKKPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHSNPIPSLNAPMQKPQNKPHSSQQPPQNFSYPEPKLGPKNSKNSLLQPL
VTPSKVSPTNEVKTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTPNADINENNENNENRDNVEKQAVRDANVKEFA
CGKWVYDDENLQAYRPSILKRVDADRQTATDITPCDYSNAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFAILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAVYERPKQDDQVEPTFYETSELAYSSTRKSEIMSNEL
NLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=320282 D4H71_RS00010 WP_139547708.1 1599..3038(+) (comH) [Helicobacter pylori strain 20-A-EK1]
ATGAAAAAATCCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAACTTCACCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAAAACCAAGACAAGTTTTAGGCGTTT
ATAATATTTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACCGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACTTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAAATCGTTTTTTCTTCAAAAGA
ATTGAAAGAACCGCACTCAAACCCAATACCTTCTTTAAATGCGCCCATGCAAAAACCACAAAATAAACCCCATTCATCGC
AACAACCTCCTCAAAACTTTTCTTATCCAGAACCCAAACTAGGCCCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GTAACTCCTAGCAAAGTAAGCCCCACTAACGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATATTA
ATGAAAACAATGAAAATAACGAAAATAGGGACAATGTGGAAAAACAAGCCGTTAGAGATGCTAATGTTAAAGAATTTGCA
TGCGGGAAGTGGGTCTATGACGATGAAAATTTACAAGCCTACCGCCCAAGCATTTTAAAACGCGTTGATGCAGACAGACA
GACTGCGACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTCGCCATTCTTCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCTAGAGCAAGAAAAGACGGCACGACTAGGCAATGCTATCTAATAGAAGAGCCTTT
AAAACAAGCATGGGAGAGTGAGTATCAAATCACCACGCAATTAGTGAAAGCCGTTTATGAGCGCCCCAAACAAGACGATC
AAGTAGAGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAATGAGCAACGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAAAGAGAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGTTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTGGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

94.363

100

0.944

Multiple sequence alignment