Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   D4I31_RS02470 Genome accession   NZ_CP032908
Coordinates   504234..504638 (+) Length   134 a.a.
NCBI ID   WP_139534264.1    Uniprot ID   -
Organism   Helicobacter pylori strain 23-A-EK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 499234..509638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I31_RS02435 - 499412..500350 (-) 939 WP_139534254.1 tetraacyldisaccharide 4'-kinase -
  D4I31_RS02440 - 500347..501129 (-) 783 WP_139534256.1 NAD+ synthase -
  D4I31_RS02450 ilvC 501378..502370 (+) 993 WP_139534258.1 ketol-acid reductoisomerase -
  D4I31_RS02455 minD 502394..503200 (+) 807 WP_139534260.1 septum site-determining protein MinD -
  D4I31_RS02460 minE 503197..503430 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  D4I31_RS02465 dprA 503437..504237 (+) 801 WP_139534262.1 DNA-processing protein DprA Machinery gene
  D4I31_RS02470 dprB 504234..504638 (+) 405 WP_139534264.1 Holliday junction resolvase RuvX Machinery gene
  D4I31_RS02475 - 504771..505430 (+) 660 WP_139534266.1 tetratricopeptide repeat protein -
  D4I31_RS02480 - 505546..505884 (+) 339 WP_000699900.1 hypothetical protein -
  D4I31_RS02485 - 505868..506344 (+) 477 WP_139534268.1 hypothetical protein -
  D4I31_RS02490 - 506500..507381 (-) 882 WP_139534270.1 RluA family pseudouridine synthase -
  D4I31_RS02495 recJ 507381..508931 (-) 1551 WP_139534272.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15232.67 Da        Isoelectric Point: 8.2822

>NTDB_id=320252 D4I31_RS02470 WP_139534264.1 504234..504638(+) (dprB) [Helicobacter pylori strain 23-A-EK1]
MILACDVGLKRIGIAVLLNGIILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=320252 D4I31_RS02470 WP_139534264.1 504234..504638(+) (dprB) [Helicobacter pylori strain 23-A-EK1]
ATGATTTTAGCATGCGATGTGGGGCTAAAACGCATTGGCATCGCTGTGCTTTTAAACGGCATTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGAGAAAAAAACATTCAAGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACGAACGCGCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGAAAATTTAGAGCATTTGGGTAAAAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAACAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.269

100

0.963

Multiple sequence alignment