Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   D4I31_RS00875 Genome accession   NZ_CP032908
Coordinates   181215..181478 (+) Length   87 a.a.
NCBI ID   WP_000584973.1    Uniprot ID   G2MDJ4
Organism   Helicobacter pylori strain 23-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 176215..186478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I31_RS00845 groES 176499..176855 (-) 357 WP_000671934.1 co-chaperone GroES -
  D4I31_RS00855 dnaG 177142..178821 (+) 1680 WP_139534038.1 DNA primase -
  D4I31_RS00860 - 178818..179870 (+) 1053 WP_139534039.1 MnmA/TRMU family protein -
  D4I31_RS00865 - 179960..180787 (+) 828 WP_128030463.1 DUF5718 family protein -
  D4I31_RS00870 comB2 180934..181215 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  D4I31_RS00875 comB3 181215..181478 (+) 264 WP_000584973.1 hypothetical protein Machinery gene
  D4I31_RS00880 - 181480..183842 (+) 2363 Protein_170 VirB4 family type IV secretion/conjugal transfer ATPase -
  D4I31_RS00890 - 184144..185484 (+) 1341 WP_201738145.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10034.13 Da        Isoelectric Point: 9.5290

>NTDB_id=320244 D4I31_RS00875 WP_000584973.1 181215..181478(+) (comB3) [Helicobacter pylori strain 23-A-EK1]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=320244 D4I31_RS00875 WP_000584973.1 181215..181478(+) (comB3) [Helicobacter pylori strain 23-A-EK1]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

98.851

100

0.989

Multiple sequence alignment