Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   D4I31_RS00870 Genome accession   NZ_CP032908
Coordinates   180934..181215 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain 23-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 175934..186215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I31_RS00845 groES 176499..176855 (-) 357 WP_000671934.1 co-chaperone GroES -
  D4I31_RS00855 dnaG 177142..178821 (+) 1680 WP_139534038.1 DNA primase -
  D4I31_RS00860 - 178818..179870 (+) 1053 WP_139534039.1 MnmA/TRMU family protein -
  D4I31_RS00865 - 179960..180787 (+) 828 WP_128030463.1 DUF5718 family protein -
  D4I31_RS00870 comB2 180934..181215 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  D4I31_RS00875 comB3 181215..181478 (+) 264 WP_000584973.1 hypothetical protein Machinery gene
  D4I31_RS00880 - 181480..183842 (+) 2363 Protein_170 VirB4 family type IV secretion/conjugal transfer ATPase -
  D4I31_RS00890 - 184144..185484 (+) 1341 WP_201738145.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=320243 D4I31_RS00870 WP_001272690.1 180934..181215(+) (comB2) [Helicobacter pylori strain 23-A-EK1]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=320243 D4I31_RS00870 WP_001272690.1 180934..181215(+) (comB2) [Helicobacter pylori strain 23-A-EK1]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGCTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment