Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | D4I62_RS00840 | Genome accession | NZ_CP032907 |
| Coordinates | 173743..174006 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584957.1 | Uniprot ID | I9QF43 |
| Organism | Helicobacter pylori strain 24-A-EK1 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 168743..179006
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4I62_RS00810 | groES | 169027..169383 (-) | 357 | WP_000671920.1 | co-chaperone GroES | - |
| D4I62_RS00820 | dnaG | 169672..171351 (+) | 1680 | WP_139533014.1 | DNA primase | - |
| D4I62_RS00825 | - | 171348..172400 (+) | 1053 | WP_139533015.1 | MnmA/TRMU family protein | - |
| D4I62_RS00830 | - | 172489..173316 (+) | 828 | WP_139533016.1 | DUF5718 family protein | - |
| D4I62_RS00835 | comB2 | 173462..173743 (+) | 282 | WP_001272690.1 | TrbC/VirB2 family protein | Machinery gene |
| D4I62_RS00840 | comB3 | 173743..174006 (+) | 264 | WP_000584957.1 | hypothetical protein | Machinery gene |
| D4I62_RS00845 | comB4 | 174008..176371 (+) | 2364 | WP_139533017.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| D4I62_RS00855 | - | 176671..178011 (+) | 1341 | WP_033756636.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9990.02 Da Isoelectric Point: 9.8535
>NTDB_id=320224 D4I62_RS00840 WP_000584957.1 173743..174006(+) (comB3) [Helicobacter pylori strain 24-A-EK1]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKSYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKSYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=320224 D4I62_RS00840 WP_000584957.1 173743..174006(+) (comB3) [Helicobacter pylori strain 24-A-EK1]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGCACCTTTTATCTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAAAGCTATAGAGCGTAG
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGCACCTTTTATCTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAAAGCTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
98.851 |
100 |
0.989 |