Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   D4I62_RS00835 Genome accession   NZ_CP032907
Coordinates   173462..173743 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain 24-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 168462..178743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I62_RS00810 groES 169027..169383 (-) 357 WP_000671920.1 co-chaperone GroES -
  D4I62_RS00820 dnaG 169672..171351 (+) 1680 WP_139533014.1 DNA primase -
  D4I62_RS00825 - 171348..172400 (+) 1053 WP_139533015.1 MnmA/TRMU family protein -
  D4I62_RS00830 - 172489..173316 (+) 828 WP_139533016.1 DUF5718 family protein -
  D4I62_RS00835 comB2 173462..173743 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  D4I62_RS00840 comB3 173743..174006 (+) 264 WP_000584957.1 hypothetical protein Machinery gene
  D4I62_RS00845 comB4 174008..176371 (+) 2364 WP_139533017.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4I62_RS00855 - 176671..178011 (+) 1341 WP_033756636.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=320223 D4I62_RS00835 WP_001272690.1 173462..173743(+) (comB2) [Helicobacter pylori strain 24-A-EK1]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=320223 D4I62_RS00835 WP_001272690.1 173462..173743(+) (comB2) [Helicobacter pylori strain 24-A-EK1]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTGTTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment