Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   D4I62_RS00010 Genome accession   NZ_CP032907
Coordinates   1598..3037 (+) Length   479 a.a.
NCBI ID   WP_139532922.1    Uniprot ID   -
Organism   Helicobacter pylori strain 24-A-EK1     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I62_RS00005 dnaA 1..1368 (+) 1368 WP_139532921.1 chromosomal replication initiator protein DnaA -
  D4I62_RS00010 comH 1598..3037 (+) 1440 WP_139532922.1 competence protein Machinery gene
  D4I62_RS00020 - 3217..3969 (+) 753 WP_139532923.1 exodeoxyribonuclease III -
  D4I62_RS00025 - 3966..4601 (-) 636 WP_139532924.1 outer membrane protein -
  D4I62_RS00030 - 4605..4961 (-) 357 WP_000836989.1 hypothetical protein -
  D4I62_RS00035 recG 5043..6914 (+) 1872 WP_139532925.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54838.91 Da        Isoelectric Point: 7.2023

>NTDB_id=320221 D4I62_RS00010 WP_139532922.1 1598..3037(+) (comH) [Helicobacter pylori strain 24-A-EK1]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHAHQMPSLNAPMQKPQNKPHSSQQPPQNFSYPEPKLGSKNSKNSLLQPL
AIPSKISPTNEVKTPTNDTKPPLKHSSQDQENNLFITPPTEKTLPNNTSNADISENNESSENKDNVEKQAIRDPNIKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAENKSGKIITPYTKISIHKTEPLEEPQTFEAKNNFAILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAVYERPKQDDQIEPTFYETSELAYSSTRKSEITRNEL
NLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=320221 D4I62_RS00010 WP_139532922.1 1598..3037(+) (comH) [Helicobacter pylori strain 24-A-EK1]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATTAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAGATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCACGCACACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAGCCCCATTCATCGC
AACAACCTCCTCAAAACTTTTCTTACCCAGAGCCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GCAATTCCTAGCAAAATAAGCCCCACTAACGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
ACAAGATCAAGAAAACAACCTCTTTATAACACCACCCACCGAAAAAACGCTCCCTAACAACACCTCTAACGCTGATATTA
GTGAAAACAATGAAAGCAGTGAGAATAAAGATAATGTGGAAAAACAAGCCATTAGAGATCCCAATATTAAAGAATTTGCA
TGCGGGAAGTGGGTCTATGACGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
AACTGCGACAGACATTACCCCTTGCGATTACAGCACTGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACTAAAA
TCTCCATTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTCGCCATTCTTCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCTAGAGCAAGAAAAGACGGCACAACTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCGTATATGAACGCCCCAAACAAGACGATC
AAATAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGTGAAATAACGCGCAATGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAAAGAGAGCAGCGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGCCTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

97.077

100

0.971

Multiple sequence alignment