Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   D4J22_RS07660 Genome accession   NZ_CP032905
Coordinates   1546288..1547031 (-) Length   247 a.a.
NCBI ID   WP_108539514.1    Uniprot ID   -
Organism   Helicobacter pylori strain 26-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1541288..1552031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4J22_RS07640 gmd 1541497..1542642 (-) 1146 WP_075658429.1 GDP-mannose 4,6-dehydratase -
  D4J22_RS07645 - 1542684..1544096 (-) 1413 WP_139547575.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D4J22_RS07650 comB10 1544167..1545303 (-) 1137 WP_139547576.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4J22_RS07655 comB9 1545296..1546288 (-) 993 WP_139547577.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D4J22_RS07660 comB8 1546288..1547031 (-) 744 WP_108539514.1 virB8 family protein Machinery gene
  D4J22_RS07665 comB7 1547028..1547141 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  D4J22_RS07670 comB6 1547157..1548212 (-) 1056 WP_139547578.1 P-type conjugative transfer protein TrbL Machinery gene
  D4J22_RS07675 - 1548220..1549215 (-) 996 WP_139547670.1 PDZ domain-containing protein -
  D4J22_RS07680 - 1549215..1549508 (-) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  D4J22_RS07685 panD 1549519..1549869 (-) 351 WP_108593697.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28811.03 Da        Isoelectric Point: 8.9604

>NTDB_id=320195 D4J22_RS07660 WP_108539514.1 1546288..1547031(-) (comB8) [Helicobacter pylori strain 26-A-EK1]
MREKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQNHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIALSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRND

Nucleotide


Download         Length: 744 bp        

>NTDB_id=320195 D4J22_RS07660 WP_108539514.1 1546288..1547031(-) (comB8) [Helicobacter pylori strain 26-A-EK1]
ATGAGAGAAAAGCCTTTCAACAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGATTGGAAAGGAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCTCTTATCTTAGCGATCGTGTTAATCAGCATTCTACCCTTACAAAAAACC
GAACACCATTTTGTGGATTTTTTAAACCAAGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGTATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGACTTAATTAAAACGCAAAACAGCATCTAT
GCGCAAAATCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCTATTGCGGCTAAACTAATGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGCATTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
GCGCCGACTAACAGGAATGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972

Multiple sequence alignment