Detailed information NTG0320193

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4J22_RS07650
• Genome accession: NZ_CP032905
• Coordinates: 1544167..1545303 (-)
• Length: 378 a.a.
• NCBI ID: WP_139547576.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 26-A-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1539167..1550303

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4J22_RS07630	hypE	1539276..1540274 (+)	999	WP_139547574.1	hydrogenase expression/formation protein HypE	-
D4J22_RS07635	-	1540572..1541504 (-)	933	WP_128072124.1	GDP-L-fucose synthase	-
D4J22_RS07640	gmd	1541497..1542642 (-)	1146	WP_075658429.1	GDP-mannose 4,6-dehydratase	-
D4J22_RS07645	-	1542684..1544096 (-)	1413	WP_139547575.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4J22_RS07650	comB10	1544167..1545303 (-)	1137	WP_139547576.1	DNA type IV secretion system protein ComB10	Machinery gene
D4J22_RS07655	comB9	1545296..1546288 (-)	993	WP_139547577.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4J22_RS07660	comB8	1546288..1547031 (-)	744	WP_108539514.1	virB8 family protein	Machinery gene
D4J22_RS07665	comB7	1547028..1547141 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4J22_RS07670	comB6	1547157..1548212 (-)	1056	WP_139547578.1	P-type conjugative transfer protein TrbL	Machinery gene
D4J22_RS07675	-	1548220..1549215 (-)	996	WP_139547670.1	PDZ domain-containing protein	-
D4J22_RS07680	-	1549215..1549508 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
D4J22_RS07685	panD	1549519..1549869 (-)	351	WP_108593697.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42144.68 Da
• Isoelectric Point: 9.9021

>NTDB_id=320193 D4J22_RS07650 WP_139547576.1 1544167..1545303(-) (comB10) [Helicobacter pylori strain 26-A-EK1]
MNKWLKGAIVFVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSSPMDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPKGIDGFTNLKE
KDTATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=320193 D4J22_RS07650 WP_139547576.1 1544167..1545303(-) (comB10) [Helicobacter pylori strain 26-A-EK1]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACCAACACGGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCTAAAGAAGAGACTTTTACTAGCTCTCCCATGGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAAGGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACACCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTACCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCCCCCATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	97.354	100	0.974