Detailed information NTG0320184

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: FDZ90_RS01495
• Genome accession: NZ_CP040172
• Coordinates: 129514..130695 (+)
• Length: 393 a.a.
• NCBI ID: WP_000136720.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain VC1374
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 124514..135695

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FDZ90_RS01460 (FDZ90_01545)	-	125351..125821 (-)	471	WP_000224703.1	Dps family protein	-
FDZ90_RS01465 (FDZ90_01550)	-	125991..126320 (-)	330	WP_001117042.1	DUF2500 domain-containing protein	-
FDZ90_RS01470 (FDZ90_01555)	-	126525..126893 (+)	369	WP_001289435.1	DUF4145 domain-containing protein	-
FDZ90_RS01475 (FDZ90_01570)	-	127396..127653 (+)	258	WP_000479993.1	hypothetical protein	-
FDZ90_RS01480 (FDZ90_01575)	-	127770..128399 (+)	630	WP_000062274.1	lysoplasmalogenase	-
FDZ90_RS01485 (FDZ90_01580)	-	128448..128714 (-)	267	WP_000645840.1	DUF1145 domain-containing protein	-
FDZ90_RS01490 (FDZ90_01585)	rsmD	128711..129310 (-)	600	WP_001189766.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
FDZ90_RS01495 (FDZ90_01590)	pilA	129514..130695 (+)	1182	WP_000136720.1	signal recognition particle-docking protein FtsY	Machinery gene
FDZ90_RS01500 (FDZ90_01595)	ftsE	130744..131418 (+)	675	WP_000617864.1	cell division ATP-binding protein FtsE	-
FDZ90_RS01505 (FDZ90_01600)	ftsX	131408..132400 (+)	993	WP_000279340.1	permease-like cell division protein FtsX	-
FDZ90_RS01510 (FDZ90_01605)	rpoH	132570..133430 (+)	861	WP_000184359.1	RNA polymerase sigma factor RpoH	-
FDZ90_RS01515 (FDZ90_01610)	sthA	133632..135032 (-)	1401	WP_000529898.1	Si-specific NAD(P)(+) transhydrogenase	-

Sequence

Protein

• Length: 393 a.a.
• Molecular weight: 43034.69 Da
• Isoelectric Point: 4.4484

>NTDB_id=320184 FDZ90_RS01495 WP_000136720.1 129514..130695(+) (pilA) [Vibrio cholerae strain VC1374]
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVAIQTETALTETETETETETETETETETETATVEPARI
VEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTARASRQQLRDGE
ALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWG
ERNQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG
QNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE

Nucleotide

• Length: 1182 bp

>NTDB_id=320184 FDZ90_RS01495 WP_000136720.1 129514..130695(+) (pilA) [Vibrio cholerae strain VC1374]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTGGCGATTCAAACGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGCCACGGTTGAACCTGCACGTATT
GTTGAACAAGAGAAACCGACCGAAAGTTTCTTTGCGCGCTTAAAGCGCAGTTTGAGCCGCACCAAAGCGAATATTGGCGC
TGGCTTCTTTGGCCTGTTTAAAGGCAAAAAGATTGATGATGACCTGTTCGAAGAGCTCGAAGAACAACTGCTGATTGCCG
ATGTCGGCATGGATACGACCAGCAAAATCATCGCTAATTTGACCGCCAGAGCTTCTCGCCAGCAACTGCGTGATGGGGAA
GCGCTGTACGGTCTGCTGAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGCAGCCATTGGTGATCGACACTGAGAA
AAAACCTTACGTGATCTTGATGGTGGGCGTGAATGGGGTGGGTAAAACTACCACGATCGGTAAACTGGCTAAACAGTTCC
AAGCGCAAGGCAAGAAAGTGATGTTGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAAGTGTGGGGA
GAGCGCAATCAAGTGCCTGTCATCGCTCAGCATACTGGCGCCGACAGTGCCTCCGTCATTTATGATGCGATTGAAGCGGC
GAAAGCGCGCGGGATTGACGTGGTGATTGCGGATACCGCAGGCCGTCTGCAAAACAAAAGTAACCTGATGGAAGAGCTGC
GCAAGATTGTGCGCGTGATGAAGAAGATTGATGACAGTGCGCCACATGAAATCATGTTGACGCTGGATGCGGGTACCGGA
CAAAACGCGATCAGTCAGGCCAAATTGTTTAGTGATGTAGCGCCCATCACGGGCATTACCTTAACTAAGCTTGATGGCAC
CGCTAAAGGTGGCGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCGGCGAGAAAATTG
ACGACTTACGTCCATTTGCAACACAAGAGTTTATCGACGCGCTATTTAGCCGCGAAGAATAA

Domains

Predicted by InterProScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (109-170)

• SRP54-type protein, GTPase domain (SRP54) (190-389)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.821	76.59	0.412