Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   D4J22_RS00010 Genome accession   NZ_CP032905
Coordinates   1596..3035 (+) Length   479 a.a.
NCBI ID   WP_139546730.1    Uniprot ID   -
Organism   Helicobacter pylori strain 26-A-EK1     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4J22_RS00005 dnaA 1..1368 (+) 1368 WP_139546729.1 chromosomal replication initiator protein DnaA -
  D4J22_RS00010 comH 1596..3035 (+) 1440 WP_139546730.1 competence protein Machinery gene
  D4J22_RS00020 - 3216..3968 (+) 753 WP_000767558.1 exodeoxyribonuclease III -
  D4J22_RS00025 - 3965..4600 (-) 636 WP_079339110.1 outer membrane protein -
  D4J22_RS00030 - 4604..4957 (-) 354 WP_139546731.1 hypothetical protein -
  D4J22_RS00035 recG 5039..6910 (+) 1872 WP_139546732.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54883.81 Da        Isoelectric Point: 6.6636

>NTDB_id=320179 D4J22_RS00010 WP_139546730.1 1596..3035(+) (comH) [Helicobacter pylori strain 26-A-EK1]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTTIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHSHQMPSLNAPMQKPQNKPHSSQQSPQNFSYPEPKLGSKNSKNSLLQPL
VTPSKISPTNEVKTPTNDTKPPLKPSSEDQENNLFITPPTEKTLPNDTSNADISENNESNENRDNVEKQAIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSHAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFAILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQIEPTFYETSELAYSSTRKSEITQNEL
NLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRLKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=320179 D4J22_RS00010 WP_139546730.1 1596..3035(+) (comH) [Helicobacter pylori strain 26-A-EK1]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCCCCACATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTACAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCACTCGCACCAAATGCCTTCTTTAAATGCGCCCATGCAAAAACCACAAAACAAGCCCCATTCATCGC
AACAATCCCCTCAAAACTTTTCTTACCCAGAACCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GTAACTCCTAGCAAAATAAGCCCCACTAACGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCCTTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACCGAAAAAACGCTCCCTAACGACACCTCTAACGCTGATATTA
GTGAAAACAATGAAAGCAACGAAAATAGGGACAATGTGGAAAAACAAGCCATTAGAGATCCTAATGTTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGACGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGATATTACCCCTTGCGATTACAGCCACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTACACTAAAA
TTTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTCGCCATTCTTCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCTAGAGCAAGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCGTGGGAAAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCTATTTATGAGCGCCCCAAACAAGACGATC
AAATAGAGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCAAAACGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTGAACGATATAATTAAAGAGAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTAAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGCATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

95.407

100

0.954

Multiple sequence alignment