Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   D4K04_RS01205 Genome accession   NZ_CP032904
Coordinates   240195..240458 (+) Length   87 a.a.
NCBI ID   WP_139521434.1    Uniprot ID   -
Organism   Helicobacter pylori strain 169-A-EK5     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 235195..245458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K04_RS01175 groES 235492..235848 (-) 357 WP_097714113.1 co-chaperone GroES -
  D4K04_RS01185 dnaG 236123..237802 (+) 1680 WP_139521428.1 DNA primase -
  D4K04_RS01190 - 237799..238851 (+) 1053 WP_139521430.1 MnmA/TRMU family protein -
  D4K04_RS01195 - 238941..239768 (+) 828 WP_139521432.1 DUF5718 family protein -
  D4K04_RS01200 comB2 239914..240195 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  D4K04_RS01205 comB3 240195..240458 (+) 264 WP_139521434.1 competence protein ComB Machinery gene
  D4K04_RS01210 comB4 240460..242823 (+) 2364 WP_139521436.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4K04_RS01220 - 243127..244467 (+) 1341 WP_198542850.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10020.11 Da        Isoelectric Point: 9.5290

>NTDB_id=320163 D4K04_RS01205 WP_139521434.1 240195..240458(+) (comB3) [Helicobacter pylori strain 169-A-EK5]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLVFLALFSALEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=320163 D4K04_RS01205 WP_139521434.1 240195..240458(+) (comB3) [Helicobacter pylori strain 169-A-EK5]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATCTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGTGT
TTTTAGCGCTCTTTAGTGCGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977

Multiple sequence alignment