Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | D4K04_RS00280 | Genome accession | NZ_CP032904 |
| Coordinates | 62580..63155 (+) | Length | 191 a.a. |
| NCBI ID | WP_139521301.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 169-A-EK5 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 57580..68155
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4K04_RS00255 | uvrD | 58271..60316 (+) | 2046 | WP_201737393.1 | DNA helicase UvrD | - |
| D4K04_RS00260 | flgA | 60313..60969 (+) | 657 | WP_139521299.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| D4K04_RS00265 | - | 60979..61542 (+) | 564 | WP_000780113.1 | UbiX family flavin prenyltransferase | - |
| D4K04_RS00270 | coaD | 61542..62015 (+) | 474 | WP_001169275.1 | pantetheine-phosphate adenylyltransferase | - |
| D4K04_RS00275 | tmk | 62017..62592 (+) | 576 | WP_139521300.1 | dTMP kinase | - |
| D4K04_RS00280 | comFC | 62580..63155 (+) | 576 | WP_139521301.1 | ComF family protein | Machinery gene |
| D4K04_RS00285 | - | 63186..63578 (+) | 393 | Protein_55 | VRR-NUC domain-containing protein | - |
| D4K04_RS00290 | - | 63565..64326 (-) | 762 | WP_001183566.1 | Eco47II family restriction endonuclease | - |
| D4K04_RS00295 | dcm | 64295..65326 (-) | 1032 | WP_000200612.1 | DNA (cytosine-5-)-methyltransferase | - |
| D4K04_RS08270 | - | 65334..65893 (+) | 560 | Protein_58 | restriction endonuclease subunit S | - |
| D4K04_RS08275 | - | 65920..66462 (+) | 543 | WP_338400336.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21189.71 Da Isoelectric Point: 8.9025
>NTDB_id=320160 D4K04_RS00280 WP_139521301.1 62580..63155(+) (comFC) [Helicobacter pylori strain 169-A-EK5]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAELVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRATNAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAELVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRATNAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=320160 D4K04_RS00280 WP_139521301.1 62580..63155(+) (comFC) [Helicobacter pylori strain 169-A-EK5]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGTTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAGCTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTGAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCGACTAACGCTGTTTCATATGCCGGGAAAAGCTTGG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCAGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGTTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAGCTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTGAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCGACTAACGCTGTTTCATATGCCGGGAAAAGCTTGG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCAGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |