Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   D4K04_RS00010 Genome accession   NZ_CP032904
Coordinates   1598..3028 (+) Length   476 a.a.
NCBI ID   WP_139521261.1    Uniprot ID   -
Organism   Helicobacter pylori strain 169-A-EK5     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K04_RS00005 dnaA 1..1368 (+) 1368 WP_139521260.1 chromosomal replication initiator protein DnaA -
  D4K04_RS00010 comH 1598..3028 (+) 1431 WP_139521261.1 competence protein Machinery gene
  D4K04_RS00020 - 3205..3957 (+) 753 WP_139521262.1 exodeoxyribonuclease III -
  D4K04_RS00025 - 3954..4589 (-) 636 WP_000668035.1 outer membrane protein -
  D4K04_RS00030 - 4593..4940 (-) 348 WP_000837038.1 hypothetical protein -
  D4K04_RS00035 recG 5022..6893 (+) 1872 WP_139521263.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 54574.45 Da        Isoelectric Point: 6.8238

>NTDB_id=320159 D4K04_RS00010 WP_139521261.1 1598..3028(+) (comH) [Helicobacter pylori strain 169-A-EK5]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKDTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHAHQMPSLNAPMQKPQNKPHSSQQPSQNFSYPEPKLGSKNSKNSLLQPL
AIPSKISPTNETQTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTSNADINESNENRDNVEKQAIRDPNIKEFACGK
WVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFAILQARSST
EKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAVYERPKQDDQVEPTFYETSELAYSSTRKSEITRNELNLN
EKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=320159 D4K04_RS00010 WP_139521261.1 1598..3028(+) (comH) [Helicobacter pylori strain 169-A-EK5]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGACACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTTACTATCACCCACATATCCACTGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACTTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCACGCGCACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAGCCCCATTCATCGC
AACAACCTTCTCAAAACTTTTCTTACCCAGAGCCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTGCAGCCTTTA
GCAATTCCTAGCAAAATAAGCCCCACTAACGAAACTCAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACCGAAAAAACGCTCCCTAACAACACCTCTAACGCTGATATTA
ATGAAAGCAATGAAAATAGGGATAATGTGGAAAAACAAGCCATTAGAGATCCTAATATTAAAGAATTTGCATGCGGGAAG
TGGGTCTATGACGATGAAAATTTACAAGCCTACCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGCGAC
AGATATTACCCCTTGCGATTACAGCACCGCTGAAAATAAAAGCGGTAAAATCACTACCCCATACACTAAAATCTCCGTTC
ATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTCGCCATTCTTCAAGCCAGAAGCTCTACG
GAAAAATGCAAAAGGGCTAGAGCAAGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCCTTTAAAACAAGC
GTGGGAAAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCCGTGTATGAGCGTCCCAAACAAGACGATCAAGTGGAGC
CAACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCGCAACGAATTGAATTTGAAT
GAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAAAGAGAGCAGCGAATACAAAGA
ATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGCCTTAGAAATAGAAGAGCAACCACGAGCTAAAAGCA
CGCCTTTGAGCATTGAAAACTCTCGTGTTGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

97.286

100

0.979

Multiple sequence alignment