Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   D4K20_RS00010 Genome accession   NZ_CP032903
Coordinates   1589..3019 (+) Length   476 a.a.
NCBI ID   WP_139544699.1    Uniprot ID   -
Organism   Helicobacter pylori strain 173-A-EK1     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K20_RS00005 dnaA 1..1368 (+) 1368 WP_139544698.1 chromosomal replication initiator protein DnaA -
  D4K20_RS00010 comH 1589..3019 (+) 1431 WP_139544699.1 competence protein Machinery gene
  D4K20_RS00020 - 3199..3951 (+) 753 WP_139544700.1 exodeoxyribonuclease III -
  D4K20_RS00025 - 3948..4583 (-) 636 WP_000668058.1 outer membrane protein -
  D4K20_RS00030 - 4587..4934 (-) 348 WP_108348487.1 hypothetical protein -
  D4K20_RS00035 recG 5016..6881 (+) 1866 WP_139544701.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 54496.33 Da        Isoelectric Point: 6.6629

>NTDB_id=320136 D4K20_RS00010 WP_139544699.1 1589..3019(+) (comH) [Helicobacter pylori strain 173-A-EK1]
MKKSLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPKQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KFSLETTLNPNRPTIPRNTQIVFSSKELKESHAHQMPSLNAPMQKPQNKPSSSQQPPQNFSYPEPKLGSKNSKNSLLQPL
ITPSKTNPTNETQTPTNNTKPPLKHSSEDQENNLFITPPTEKTLPNDTSNADINESNENKDNVEKQAIRDPNIKEFACGK
WVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSST
EKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQIEPTFYETSELAYSSTRKSEITHNELNLN
EKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVSFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=320136 D4K20_RS00010 WP_139544699.1 1589..3019(+) (comH) [Helicobacter pylori strain 173-A-EK1]
ATGAAAAAATCCCTTTGCCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGACTCTAAAGAACCAAAACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATCGTCTATCAACCCCTTGATGAA
AAATTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACCATTCCCAGAAACACCCAAATCGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCACGCGCACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAATAAACCCAGCTCATCGC
AACAACCTCCTCAAAACTTTTCTTACCCAGAGCCCAAACTAGGATCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
ATAACTCCTAGCAAAACAAACCCCACTAACGAAACTCAAACGCCAACAAACAACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACCGAAAAAACGCTCCCTAACGACACCTCTAACGCTGATATTA
ATGAAAGCAATGAGAATAAAGATAATGTGGAAAAACAAGCCATTAGAGATCCCAATATTAAAGAATTTGCATGCGGGAAG
TGGGTCTATGACGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAAACTGCGAC
AGACATTACCCCTTGCGATTACAGTAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATTTCTGTTC
ATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACGATTCTTCAAGCCAGAAGCTCTACA
GAAAAATGCAAAAGGGCTAGAGCCAGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCCTTTAAAACAAGC
GTGGGAAAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAGCGCCCCAAACAAGACGATCAAATAGAGC
CGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCACAATGAATTGAATTTGAAT
GAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATTAAAGAGAGCAGTGAATACAAAGA
ATGGGTTAAAAACCATGTGAGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAAGCA
CGCCTTTGAGCATTGAAAACTCTCGTGTTGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

95.198

100

0.958

Multiple sequence alignment