Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | D4K40_RS00280 | Genome accession | NZ_CP032902 |
| Coordinates | 62518..63093 (+) | Length | 191 a.a. |
| NCBI ID | WP_139520274.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 280-A-EK1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 57518..68093
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4K40_RS00255 | uvrD | 58209..60254 (+) | 2046 | WP_201737297.1 | DNA helicase UvrD | - |
| D4K40_RS00260 | flgA | 60251..60907 (+) | 657 | WP_139520272.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| D4K40_RS00265 | - | 60917..61480 (+) | 564 | WP_000780095.1 | UbiX family flavin prenyltransferase | - |
| D4K40_RS00270 | coaD | 61480..61953 (+) | 474 | WP_001169276.1 | pantetheine-phosphate adenylyltransferase | - |
| D4K40_RS00275 | tmk | 61955..62530 (+) | 576 | WP_139520273.1 | dTMP kinase | - |
| D4K40_RS00280 | comFC | 62518..63093 (+) | 576 | WP_139520274.1 | ComF family protein | Machinery gene |
| D4K40_RS00285 | - | 63127..65088 (+) | 1962 | WP_139520275.1 | N-6 DNA methylase | - |
| D4K40_RS08130 | - | 65085..66265 (+) | 1181 | Protein_56 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21394.89 Da Isoelectric Point: 8.9024
>NTDB_id=320115 D4K40_RS00280 WP_139520274.1 62518..63093(+) (comFC) [Helicobacter pylori strain 280-A-EK1]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVRILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKHLKTLNTKVHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVRILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKHLKTLNTKVHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=320115 D4K40_RS00280 WP_139520274.1 62518..63093(+) (comFC) [Helicobacter pylori strain 280-A-EK1]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCTTGAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCAAAGAATTTGTGAGAATCTTACAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTGAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCTAACAACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAACCCTAAACACAAAAGTGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCTTGAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCAAAGAATTTGTGAGAATCTTACAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTGAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCTAACAACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAACCCTAAACACAAAAGTGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.335 |
100 |
0.963 |