Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   D4K40_RS00010 Genome accession   NZ_CP032902
Coordinates   1603..3042 (+) Length   479 a.a.
NCBI ID   WP_139520234.1    Uniprot ID   -
Organism   Helicobacter pylori strain 280-A-EK1     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K40_RS00005 dnaA 1..1374 (+) 1374 WP_139520233.1 chromosomal replication initiator protein DnaA -
  D4K40_RS00010 comH 1603..3042 (+) 1440 WP_139520234.1 competence protein Machinery gene
  D4K40_RS00020 - 3223..3975 (+) 753 WP_139520235.1 exodeoxyribonuclease III -
  D4K40_RS00025 - 3972..4607 (-) 636 WP_000668047.1 outer membrane protein -
  D4K40_RS00030 - 4611..4958 (-) 348 WP_139520236.1 hypothetical protein -
  D4K40_RS00035 recG 5040..6911 (+) 1872 WP_139520237.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54947.95 Da        Isoelectric Point: 7.0429

>NTDB_id=320114 D4K40_RS00010 WP_139520234.1 1603..3042(+) (comH) [Helicobacter pylori strain 280-A-EK1]
MKKTLCLSFFLIFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPKQVLGIYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHPHQMPSLNAPMQKPQNKPHSSQQSSQNFSYPEPKLGSKNSKNSLLQPL
VTPSKISSANEVKTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTPNADISENNESNENRDNVEKQAIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRVDEYKQTATDITPCDYSHAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQTR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQVEPTFYETSELAYSSTRKSEITSNEL
NLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=320114 D4K40_RS00010 WP_139520234.1 1603..3042(+) (comH) [Helicobacter pylori strain 280-A-EK1]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGATTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAAACAAGTTTTAGGCATTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCCAGAAACACCCAGATCGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCACCCGCACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAACCCCATTCATCGC
AACAATCTTCTCAAAACTTTTCTTACCCAGAGCCCAAACTAGGCTCTAAAAACTCCAAAAACAGCCTTTTACAGCCTTTA
GTAACTCCTAGCAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACCGAAAAAACGCTCCCTAATAACACCCCTAACGCTGATATTA
GTGAAAACAATGAAAGCAATGAAAATAGGGATAATGTGGAAAAACAAGCGATTAGAGATCCCAATGTTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGACGATGAAAATTTACAAGCCTACCGCCCAAGCATTTTAAAACGCGTTGATGAATACAAACA
GACTGCGACAGACATTACCCCTTGCGATTACAGCCACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCACAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACGATTCTTCAAACCAGA
AGCTCTACAGAAAAATGCAAAAGGGCTAGAGCGCGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGTGAATATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAACGCCCCAAACAAGACGATC
AAGTAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGAGCAATGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAAAGAGAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

94.99

100

0.95

Multiple sequence alignment