Detailed information NTG0320100

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: E6P00_RS09750
• Genome accession: NZ_CP040127
• Coordinates: 1524117..1525121 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PA298
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1519117..1530121

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E6P00_RS09720 (E6P00_09720)	fghA	1519209..1520060 (+)	852	WP_009876912.1	S-formylglutathione hydrolase	-
E6P00_RS09725 (E6P00_09725)	ispF	1520131..1520604 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
E6P00_RS09730 (E6P00_09730)	truD	1520601..1521668 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
E6P00_RS09735 (E6P00_09735)	surE	1521656..1522405 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
E6P00_RS09740 (E6P00_09740)	-	1522438..1523073 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
E6P00_RS09745 (E6P00_09745)	-	1523119..1524012 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
E6P00_RS09750 (E6P00_09750)	rpoS	1524117..1525121 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
E6P00_RS09755 (E6P00_09755)	-	1525666..1526865 (+)	1200	WP_122379227.1	site-specific integrase	-
E6P00_RS09760 (E6P00_09760)	-	1526862..1527929 (+)	1068	WP_122379228.1	YhcG family protein	-
E6P00_RS09765 (E6P00_09765)	-	1528265..1528660 (+)	396	WP_122379229.1	ATPase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=320100 E6P00_RS09750 WP_003113871.1 1524117..1525121(+) (rpoS) [Pseudomonas aeruginosa strain PA298]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=320100 E6P00_RS09750 WP_003113871.1 1524117..1525121(+) (rpoS) [Pseudomonas aeruginosa strain PA298]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653