Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   D4K94_RS07700 Genome accession   NZ_CP032900
Coordinates   1563633..1563896 (-) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori strain 476-A-EK5     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1558633..1568896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K94_RS07685 - 1559607..1560947 (-) 1341 WP_201737468.1 COG3014 family protein -
  D4K94_RS07695 comB4 1561268..1563631 (-) 2364 WP_139546593.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4K94_RS07700 comB3 1563633..1563896 (-) 264 WP_000584956.1 hypothetical protein Machinery gene
  D4K94_RS07705 comB2 1563896..1564177 (-) 282 WP_101000542.1 TrbC/VirB2 family protein Machinery gene
  D4K94_RS07710 - 1564323..1565150 (-) 828 WP_139542493.1 DUF5718 family protein -
  D4K94_RS07715 - 1565241..1566293 (-) 1053 WP_139542494.1 MnmA/TRMU family protein -
  D4K94_RS07720 dnaG 1566290..1567969 (-) 1680 WP_139542495.1 DNA primase -
  D4K94_RS07730 groES 1568253..1568609 (+) 357 WP_000671934.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=320091 D4K94_RS07700 WP_000584956.1 1563633..1563896(-) (comB3) [Helicobacter pylori strain 476-A-EK5]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=320091 D4K94_RS07700 WP_000584956.1 1563633..1563896(-) (comB3) [Helicobacter pylori strain 476-A-EK5]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCCTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATCGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment