Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   D4K94_RS00010 Genome accession   NZ_CP032900
Coordinates   1597..3036 (+) Length   479 a.a.
NCBI ID   WP_139541545.1    Uniprot ID   -
Organism   Helicobacter pylori strain 476-A-EK5     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K94_RS00005 dnaA 1..1368 (+) 1368 WP_139546234.1 chromosomal replication initiator protein DnaA -
  D4K94_RS00010 comH 1597..3036 (+) 1440 WP_139541545.1 competence protein Machinery gene
  D4K94_RS00020 - 3216..3968 (+) 753 WP_139541546.1 exodeoxyribonuclease III -
  D4K94_RS00025 - 3965..4600 (-) 636 WP_000668036.1 outer membrane protein -
  D4K94_RS00030 - 4604..4951 (-) 348 WP_139541547.1 hypothetical protein -
  D4K94_RS00035 recG 5033..6904 (+) 1872 WP_139541548.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54913.79 Da        Isoelectric Point: 7.0061

>NTDB_id=320073 D4K94_RS00010 WP_139541545.1 1597..3036(+) (comH) [Helicobacter pylori strain 476-A-EK5]
MKKTLYLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
RLSLETTLNPNRPTIPRNTQIVFSSKELKEAHAHQMPSLNAPMQKPQNKPNSSQQPSQNFSYPEPKLGSKNSKNSLLQPL
AIPSKISPTNETQTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTSNADISENYESNENKDNVEKQAVRDANVKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQIEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIIKKSSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=320073 D4K94_RS00010 WP_139541545.1 1597..3036(+) (comH) [Helicobacter pylori strain 476-A-EK5]
ATGAAAAAAACCCTTTATCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAACTTTTAGAAGA
AATCAAAACTTCGCCACATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATCGTCTATCAACCCCTTGATGAA
AGACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAAGCGCACGCACACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAACCCAACTCATCGC
AACAACCTTCTCAAAACTTTTCTTACCCAGAGCCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GCAATTCCTAGCAAAATAAGCCCTACTAACGAAACTCAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACCGAAAAAACGCTCCCTAACAACACCTCTAACGCTGATATTA
GTGAAAATTATGAAAGCAATGAGAATAAAGATAATGTGGAAAAACAAGCCGTTAGAGATGCTAATGTTAAAGAATTTGCA
TGCGGGAAGTGGGTCTATGACGATGAAAACTTGCAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTTACGATTCTTCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCTAGAGCAAGAAAAGACGGCACGACTAGGCAATGCTATCTAATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAGCGCCCCAAACAAGACGATC
AAATAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAAAAAGAGCAGCGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGCTTTAGAAATAGAAGAGCAACCACGAG
CTAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

96.66

100

0.967

Multiple sequence alignment