Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   D4L20_RS02630 Genome accession   NZ_CP032899
Coordinates   534100..534504 (+) Length   134 a.a.
NCBI ID   WP_139549417.1    Uniprot ID   -
Organism   Helicobacter pylori strain 478-A-EK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 529100..539504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L20_RS02595 - 529278..530216 (-) 939 WP_139549412.1 tetraacyldisaccharide 4'-kinase -
  D4L20_RS02600 - 530213..530995 (-) 783 WP_139549413.1 NAD+ synthase -
  D4L20_RS02610 ilvC 531244..532236 (+) 993 WP_139549414.1 ketol-acid reductoisomerase -
  D4L20_RS02615 minD 532255..533061 (+) 807 WP_139549415.1 septum site-determining protein MinD -
  D4L20_RS02620 minE 533058..533291 (+) 234 WP_108295699.1 cell division topological specificity factor MinE -
  D4L20_RS02625 dprA 533303..534103 (+) 801 WP_139549416.1 DNA-processing protein DprA Machinery gene
  D4L20_RS02630 dprB 534100..534504 (+) 405 WP_139549417.1 Holliday junction resolvase RuvX Machinery gene
  D4L20_RS02635 - 534634..534885 (+) 252 WP_139549418.1 tetratricopeptide repeat protein -
  D4L20_RS02640 - 535070..535408 (+) 339 WP_139549419.1 hypothetical protein -
  D4L20_RS02645 - 535392..535952 (+) 561 WP_139549420.1 hypothetical protein -
  D4L20_RS02650 - 536060..536941 (-) 882 WP_139549421.1 RluA family pseudouridine synthase -
  D4L20_RS02655 recJ 536941..538491 (-) 1551 WP_139549422.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15244.77 Da        Isoelectric Point: 9.1737

>NTDB_id=320065 D4L20_RS02630 WP_139549417.1 534100..534504(+) (dprB) [Helicobacter pylori strain 478-A-EK1]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSVLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=320065 D4L20_RS02630 WP_139549417.1 534100..534504(+) (dprB) [Helicobacter pylori strain 478-A-EK1]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATTGCTGTGCTTTTAAACGGCGTTATCCTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGTTTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCTAATGAAAGCTATGCGGATACGAACGCGCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGCAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGATTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

97.015

100

0.97

Multiple sequence alignment