Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   D4L20_RS00435 Genome accession   NZ_CP032899
Coordinates   92062..93270 (+) Length   402 a.a.
NCBI ID   WP_139549147.1    Uniprot ID   -
Organism   Helicobacter pylori strain 478-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 87062..98270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L20_RS08155 - 89144..89284 (+) 141 WP_000789929.1 hypothetical protein -
  D4L20_RS00425 - 89277..90413 (+) 1137 WP_139549145.1 VirB8/TrbF family protein -
  D4L20_RS00430 - 90410..92065 (+) 1656 WP_139549146.1 TrbG/VirB9 family P-type conjugative transfer protein -
  D4L20_RS00435 comB10 92062..93270 (+) 1209 WP_139549147.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4L20_RS00440 - 93254..95494 (+) 2241 WP_139549148.1 collagen-like protein -
  D4L20_RS00445 - 95507..96469 (+) 963 WP_139549149.1 hypothetical protein -
  D4L20_RS00450 - 96486..96761 (+) 276 WP_139549150.1 hypothetical protein -
  D4L20_RS00455 - 96766..97710 (+) 945 WP_000362459.1 CpaF/VirB11 family protein -
  D4L20_RS00460 - 97707..98225 (+) 519 WP_000760570.1 hypothetical protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 44932.55 Da        Isoelectric Point: 10.1502

>NTDB_id=320053 D4L20_RS00435 WP_139549147.1 92062..93270(+) (comB10) [Helicobacter pylori strain 478-A-EK1]
MKQSLLKKIGLGAGGFVVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKEKAKETPKVTTQEPTTQTS
PNPSVSANPNIKDYSHLNNNLNQQNSTITHLQQVLQSPSKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSF
TNLKYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRL
NIAWTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGD
YLLMQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPPIKTKEEINNEE
EI

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=320053 D4L20_RS00435 WP_139549147.1 92062..93270(+) (comB10) [Helicobacter pylori strain 478-A-EK1]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGCTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGTGAGAGTAAATTCCCTTTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAGCCAAAAGAAAAAGCCAAAGAAACACCAAAAGTAACTACCCAAGAGCCTACAACACAAACTAGC
CCCAATCCTAGTGTTTCAGCTAATCCTAACATTAAAGATTATAGTCATCTTAACAACAATCTTAATCAGCAAAATAGTAC
TATCACGCATTTACAACAAGTTTTACAAAGCCCCTCTAAAATAAAGCCTAAACCAAAGCATACTAAAGAGCAATTAGAAT
TTTTAAACACACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATACGGCGTGGATAGTTTT
ACTAATTTAAAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACTGCTGATAGAATGATACCAGC
CTTTTTAATCACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGG
GTAGAGCGGTGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTT
AACATTGCTTGGACTAGAATTATCACGCCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGG
TTATAATGGCTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTA
ATGGTCTTTTAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGAT
TACTTGCTTATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGC
GCAAAACCCCATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAA
AAGATGGGGAGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAA
GAAATCTAA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(178-368)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

52.792

98.01

0.517

Multiple sequence alignment