Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | D4L20_RS00405 | Genome accession | NZ_CP032899 |
| Coordinates | 86063..86326 (+) | Length | 87 a.a. |
| NCBI ID | WP_001177716.1 | Uniprot ID | T0EUE0 |
| Organism | Helicobacter pylori strain 478-A-EK1 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 81063..91326
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4L20_RS00365 | - | 81336..81677 (+) | 342 | WP_139549138.1 | hypothetical protein | - |
| D4L20_RS00370 | - | 81687..82598 (+) | 912 | WP_139549139.1 | LPP20 family lipoprotein | - |
| D4L20_RS00375 | - | 82953..83540 (-) | 588 | Protein_74 | restriction endonuclease subunit S | - |
| D4L20_RS00380 | - | 83576..84220 (-) | 645 | Protein_75 | restriction endonuclease subunit M | - |
| D4L20_RS00385 | - | 84275..85063 (+) | 789 | WP_001140574.1 | hypothetical protein | - |
| D4L20_RS00390 | - | 85066..85254 (+) | 189 | WP_139549141.1 | hypothetical protein | - |
| D4L20_RS00395 | - | 85291..85770 (+) | 480 | WP_139549142.1 | hypothetical protein | - |
| D4L20_RS00400 | comB2 | 85767..86051 (+) | 285 | WP_000736106.1 | TrbC/VirB2 family protein | Machinery gene |
| D4L20_RS00405 | comB3 | 86063..86326 (+) | 264 | WP_001177716.1 | hypothetical protein | Machinery gene |
| D4L20_RS00410 | - | 86338..86571 (+) | 234 | WP_139549143.1 | hypothetical protein | - |
| D4L20_RS00415 | - | 86571..89147 (+) | 2577 | WP_139549144.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| D4L20_RS08155 | - | 89144..89284 (+) | 141 | WP_000789929.1 | hypothetical protein | - |
| D4L20_RS00425 | - | 89277..90413 (+) | 1137 | WP_139549145.1 | VirB8/TrbF family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9970.83 Da Isoelectric Point: 5.7206
>NTDB_id=320052 D4L20_RS00405 WP_001177716.1 86063..86326(+) (comB3) [Helicobacter pylori strain 478-A-EK1]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=320052 D4L20_RS00405 WP_001177716.1 86063..86326(+) (comB3) [Helicobacter pylori strain 478-A-EK1]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
60.92 |
100 |
0.609 |