Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | D4L20_RS00270 | Genome accession | NZ_CP032899 |
| Coordinates | 60108..60683 (+) | Length | 191 a.a. |
| NCBI ID | WP_139549128.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 478-A-EK1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 55108..65683
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4L20_RS00245 | uvrD | 55799..57844 (+) | 2046 | WP_180339063.1 | DNA helicase UvrD | - |
| D4L20_RS00250 | flgA | 57841..58497 (+) | 657 | WP_139549125.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| D4L20_RS00255 | - | 58507..59070 (+) | 564 | WP_139549126.1 | UbiX family flavin prenyltransferase | - |
| D4L20_RS00260 | coaD | 59070..59543 (+) | 474 | WP_033589676.1 | pantetheine-phosphate adenylyltransferase | - |
| D4L20_RS00265 | tmk | 59545..60120 (+) | 576 | WP_139549127.1 | dTMP kinase | - |
| D4L20_RS00270 | comFC | 60108..60683 (+) | 576 | WP_139549128.1 | ComF family protein | Machinery gene |
| D4L20_RS00275 | - | 60716..62755 (+) | 2040 | WP_139549129.1 | class I SAM-dependent DNA methyltransferase | - |
| D4L20_RS00280 | - | 62752..63948 (+) | 1197 | WP_139549130.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21262.85 Da Isoelectric Point: 8.8998
>NTDB_id=320050 D4L20_RS00270 WP_139549128.1 60108..60683(+) (comFC) [Helicobacter pylori strain 478-A-EK1]
MRCLTCLKLSFKPLCPNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=320050 D4L20_RS00270 WP_139549128.1 60108..60683(+) (comFC) [Helicobacter pylori strain 478-A-EK1]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGAATATTCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
TTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCGACTAACGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAACAACCCACGGGATTTCACTTTCAAAGGCGATGAGAGTTTAGATTATTTTTTACTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCACACTTTGCGATCGCGCTTTG
CAGTGCGGATGAATGA
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGAATATTCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
TTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCGACTAACGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAACAACCCACGGGATTTCACTTTCAAAGGCGATGAGAGTTTAGATTATTTTTTACTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCACACTTTGCGATCGCGCTTTG
CAGTGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.335 |
100 |
0.963 |